Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele42g0234 ATGGCGATTCCTCCTCAAATCTTCCCTCCTCGTAAACGACGGCCGTCGGCGGGGTCGTTTATCTCTCCCAAACTCACAGAACTCGACCTCCTTCACTCTCTGTTTCACCTAACCCATGAGATTTCCTCTCTCAAACCCATCCACTTCCTTCTCAGACGCAATTCATCTTCCATCATTCGAAAAACCAATCTCCTCGCTGTTCTCTTCGAAGAGTTGATTAGAAGTTCGGTTTATCTTTCCTTTCAATCTGTCATTCTGTGTTTCGAAGAAATGTATATAGTTCTACAGAGAATCAAGACCTTGATTGAAGATTGCTCCAACGGAAGCAAGATGGCGCTGTTGATGCAGAACGAATCGGTTTCTGATAGTTTTCACAAACTCACTGCGGATTTATCGACGCTTCTGGATATTTTCCCGGTGGCGGAGCTTGAATTGAGCGACGACTTGCGAGAGCTTGTGATCCTGATCAGAAAACAATGCACTGAATCCAAGGCTTTTGTGGATCCGAAGGACAACGAGCTCAGGCATGAGGTTGTCACGATGCTTGCTCGTATTAAGCGGGAGATCGTCCCCGATCATTCGAAACTTGCAGATATCTTCGAGAGCTTGGAAATCCGAGATTCTTCGAGCTGTAGAGCGGAGATTGAGAGTTTAGAGGAGGAGATTCAGAATCGAAACGATGAGCAATCCAAATCCGAGCTCGTCGCTTTGATCGGACTCGTCCGATACGCGAAATGCGTCCTTTTCGGAGCTTCCACGCCGTCATCTTCTTCCTCTGATGATGAAGTACAGCGGCGGAAACAGCCGTCGGAGATCGTTGTCCCGGCGGATTTCAGGTGCCCGATCACTCTCGAGCTGATGCTAGACCCGGTTGTCGTGGCCACAGGACAGACGTACGATCGTGAGTCCATCAAGCTGTGGTTCGAATCAGGGCATAACACGTGTCCCAAGACTGGTCAAACATTGGACCACACGGACCTCATCCCGAACCGTGCATTGAAGAATCTTATAGCAATGTGGTGCCGCGAGCAAAAGATACTGTTTGAAACCGCGGGCACTAACGACAAACCTCACGGCGTTATCATCAACAAAGCCGCCTTGGAAGCTACTAGAATGACGGCTTCATTCTTAGTCAACAAGTTGTCTCTTTTTTCTCCATCCATGGAAGTCGCAAACGCGGTCGTTTATGAGCTTCGTGTTCTCTCTAAAACAGACTCCGATAGCCGAGCCTGCATAGCCGAAGCCGGAGCCATCCCCCACTTAGTTAGCTACTTGAGCTTCAACGTCGGCTCACAGCATCCAAACGTCCAAGTTAACGCCGTCACGACCATCCTCAACCTTTCCCTCCTCGAGGCGAACAAAACGAGGATAATGGAGACTGACGGAGCTTTAAACGGCGTCATCGAGGTCCTTCGCTCGGGAACCACGTGGGAGGCGAAGGCCAACGCGGCCGCCACAATATTCAGCTTATCTGGCGTTCCCTCGTGTAGGAAAAGACTAGGGAGAAAGACACGTGTCACACGGGGGTTGATTGACTTGGCAAGGTGTGGGCCCACAGGAACTAAGAGGGATGCTCTGGTGGCAATTTTGACCCTGGCGGCGGATAGAGAGACGGTGGCAAGGTTGGTGGAAGCTGGGGTTGTGCAGATGACGGCGGAAGTGATGGACGGGTTACCGGAAGAGGCAGTGACAATTCTTGAGGTGGTTGTGAAGCGGGGAGGGTTGGTGGCCGTCGCTGCCGCGTTCGGCAGCATTAAGAAATTGGGCGTTATATTGAGGGAAGGTTCTGATAGGGCCAGAGAGAGTGCGGCGGCGACGCTAGCCACAATGTGTCGTAAAGGGGGGACAGATATAGTGGGCGAGTTGGCGTCCTTGCCGGGAATTGAAAGAGTGATATGGGAATTGATGGCCATTGGGACTGTCAGAGGGAAAAGAAAAGCCGCCATGTTGTTGAGGACTCTCCGACGATGGGCTGCCGGTTTGGACAGTGCAGGGCCAACGGAAGGATATTCAACGGCCATCACTTCGTCAACAACGATGGTTTCAACTCAATAG 2055 0.5129 MAIPPQIFPPRKRRPSAGSFISPKLTELDLLHSLFHLTHEISSLKPIHFLLRRNSSSIIRKTNLLAVLFEELIRSSVYLSFQSVILCFEEMYIVLQRIKTLIEDCSNGSKMALLMQNESVSDSFHKLTADLSTLLDIFPVAELELSDDLRELVILIRKQCTESKAFVDPKDNELRHEVVTMLARIKREIVPDHSKLADIFESLEIRDSSSCRAEIESLEEEIQNRNDEQSKSELVALIGLVRYAKCVLFGASTPSSSSSDDEVQRRKQPSEIVVPADFRCPITLELMLDPVVVATGQTYDRESIKLWFESGHNTCPKTGQTLDHTDLIPNRALKNLIAMWCREQKILFETAGTNDKPHGVIINKAALEATRMTASFLVNKLSLFSPSMEVANAVVYELRVLSKTDSDSRACIAEAGAIPHLVSYLSFNVGSQHPNVQVNAVTTILNLSLLEANKTRIMETDGALNGVIEVLRSGTTWEAKANAAATIFSLSGVPSCRKRLGRKTRVTRGLIDLARCGPTGTKRDALVAILTLAADRETVARLVEAGVVQMTAEVMDGLPEEAVTILEVVVKRGGLVAVAAAFGSIKKLGVILREGSDRARESAAATLATMCRKGGTDIVGELASLPGIERVIWELMAIGTVRGKRKAAMLLRTLRRWAAGLDSAGPTEGYSTAITSSTTMVSTQ 684
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele42g0234 684 FunFam RING-type E3 ubiquitin transferase 271 347 - -
Lele42g0234 684 CDD RING-Ubox_PUB 278 320 IPR045210 -
Lele42g0234 684 SMART arm_5 405 449 IPR000225 GO:0005515
Lele42g0234 684 PANTHER U BOX DOMAIN-CONTAINING 52 654 - -
Lele42g0234 684 SUPERFAMILY ARM repeat 383 654 IPR016024 -
Lele42g0234 684 Gene3D - 373 656 IPR011989 -
Lele42g0234 684 SMART Ubox_2 277 340 IPR003613 GO:0004842|GO:0016567
Lele42g0234 684 Pfam U-box domain 274 345 IPR003613 GO:0004842|GO:0016567
Lele42g0234 684 Coils Coil 208 235 - -
Lele42g0234 684 Gene3D - 50 141 IPR036537 GO:0007166
Lele42g0234 684 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 416 462 IPR000225 GO:0005515
Lele42g0234 684 Pfam Armadillo/beta-catenin-like repeat 406 448 IPR000225 GO:0005515
Lele42g0234 684 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 256 351 IPR013083 -
Lele42g0234 684 ProSiteProfiles U-box domain profile. 273 347 IPR003613 GO:0004842|GO:0016567
Lele42g0234 684 SUPERFAMILY RING/U-box 273 346 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele42g0234 Lele-ChrLele42 2006403 2008457 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele42g0234 9 683 U-box Gene Family AT5G01830 58.321 0.0 753