Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele42g0201 ATGACGACCTCCTTCACAGAACTCCTTTCCATGGATGATCATCGCTGGCCTCCTCCTCCTCCTCCTCCTCCTCCTTCTGAAATTCCTAAATTTAAGTCAACCCCACCCCCTTCTTTGCCCCTTTCTTGTTCCCTTCTATCTCCTTCTTCTTACTTGGCTTTCTCTTCTGGCTTCAGCCCTACCCAGTTCTTGAGCTCTCCCTTGTTTCTCTCATCCCCAAATGTTCTTCCTTCTACTGAGACTTTTCAGAACAAGGAGCAGGAGCAGAAAACATTCTCTGAATTCTCCTTCCATACCCAATCCAAGTCGTCGTCTTTCTTGGAATATTCTTCCAGCATGTTTCAAGCGCAGCAGGAACCACTGAAACAAGAACCGTCATGGAATGAGAGGACAGCTACAAAATCTGAATATCCATCAACTCAGAGCTTCTCCTCAGAACCACAGATGCAAAGCAATTTGGCTCCTGCTTCTGGTTATACTAATAACTACGCGAATTCGTCCCAGTCCACAAGGGAGCAAAAGAGGTCAGATGATGGGTATAACTGGAGAAAATATGGACAGAAACAGGTGAAGGCGAGCGAAAATGCTCGCAGTTATTACAAGTGCTCGCATCCGAGTTGCAACATGAAGAAGAAGGTCGAGAGGGCTCTGGATGGACAAGTTACTGAGATAGTATATAAGGGAACACATAACCATCCCAAGCCTCAGTCCACTAGAAGATCTAGCTCTCAATCAATTCAACCTTCTTCCTCTTGTACCAATTCTGGGCTTTCTGATCAATCCGCGGTGAGCCTAGGGAATCTACGGATGGAGCGAACCTCTTTCCAAGAAGATTCTTCTGTCTCTGTTGGAGAAAATGACTTTGAGCACACATCTCAAGCCTGTTACTCTGGGGGTGATGACAATGACTTTGGCCCTGATGCCAAAAGATGTAAAGGAGAGAATGAAATTGATGGCTATGCCTCATCCGGGAATAGAACTGTGAGGGAACCAAGAGTTGTAGTTCAAACTACAAGTGAGATTGATATTCTTGATGATGGCTATAGATGGAGGAAATATGGTCAGAAAGTGGTTAAAGGAAATCCAAACCCAAGGAGTTACTACAAGTGCACAGCTCCAGGCTGTTCGGTGAGGAAACATATTGAGCGAGCTGCCCATGATATGAAAGCTGTGATCACAACGTACGAAGGGAAACACAACCACGATGTTCCTGCAGCACGAGGGAGTGGGAGTTATAACCTGAACGCAGCTTCTCTGAACAGCAACACCATCAACAACAATGTTACCGCACCTATAAGGCCATCGGCGTCTTCAGCATTGACCAGCTATTCTGGCAAATCAAGTTTCACAAACTCGCTTAATAACACAAGCCAGCCAACATCTGCTGCAAGTCAAGAACCTTTTCTATTTGACATGTTGCAGAGCCCAGCAAGTTTTGCATACTCTGATTTCGTTACATCAATGGGATCGTATAATCCTAACGCATAA 1488 0.453 MTTSFTELLSMDDHRWPPPPPPPPPSEIPKFKSTPPPSLPLSCSLLSPSSYLAFSSGFSPTQFLSSPLFLSSPNVLPSTETFQNKEQEQKTFSEFSFHTQSKSSSFLEYSSSMFQAQQEPLKQEPSWNERTATKSEYPSTQSFSSEPQMQSNLAPASGYTNNYANSSQSTREQKRSDDGYNWRKYGQKQVKASENARSYYKCSHPSCNMKKKVERALDGQVTEIVYKGTHNHPKPQSTRRSSSQSIQPSSSCTNSGLSDQSAVSLGNLRMERTSFQEDSSVSVGENDFEHTSQACYSGGDDNDFGPDAKRCKGENEIDGYASSGNRTVREPRVVVQTTSEIDILDDGYRWRKYGQKVVKGNPNPRSYYKCTAPGCSVRKHIERAAHDMKAVITTYEGKHNHDVPAARGSGSYNLNAASLNSNTINNNVTAPIRPSASSALTSYSGKSSFTNSLNNTSQPTSAASQEPFLFDMLQSPASFAYSDFVTSMGSYNPNA 495
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele42g0201 495 MobiDBLite consensus disorder prediction 115 182 - -
Lele42g0201 495 Gene3D WRKY domain 331 397 IPR036576 GO:0003700|GO:0006355|GO:0043565
Lele42g0201 495 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 66 434 IPR044810 GO:0003700
Lele42g0201 495 ProSiteProfiles WRKY domain profile. 339 404 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lele42g0201 495 FunFam WRKY transcription factor 33 331 397 - -
Lele42g0201 495 SUPERFAMILY WRKY DNA-binding domain 336 404 IPR036576 GO:0003700|GO:0006355|GO:0043565
Lele42g0201 495 MobiDBLite consensus disorder prediction 115 170 - -
Lele42g0201 495 MobiDBLite consensus disorder prediction 14 36 - -
Lele42g0201 495 ProSiteProfiles WRKY domain profile. 171 235 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lele42g0201 495 SUPERFAMILY WRKY DNA-binding domain 172 235 IPR036576 GO:0003700|GO:0006355|GO:0043565
Lele42g0201 495 FunFam WRKY transcription factor 165 236 - -
Lele42g0201 495 MobiDBLite consensus disorder prediction 228 260 - -
Lele42g0201 495 SMART WRKY_cls 176 234 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lele42g0201 495 SMART WRKY_cls 344 403 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lele42g0201 495 MobiDBLite consensus disorder prediction 231 260 - -
Lele42g0201 495 Gene3D WRKY domain 161 236 IPR036576 GO:0003700|GO:0006355|GO:0043565
Lele42g0201 495 MobiDBLite consensus disorder prediction 1 38 - -
Lele42g0201 495 Pfam WRKY DNA -binding domain 177 233 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lele42g0201 495 Pfam WRKY DNA -binding domain 345 401 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele42g0201 Lele-ChrLele42 1651002 1653123 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele42g0201 27 474 WRKY Transcription Factor Family AT2G38470 47.835 1.48e-110 336
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Lele42g0201 WRKY 2.4e-24 CL0274
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele42g0201 42 1651002 1653123 Lele37g1382 37 22615163 22617589 CCT
Lele42g0201 42 1651002 1653123 Lele39g0042 39 313153 318496 CCT
Lele42g0201 42 1651002 1653123 Lele40g1200 40 21877727 21879642 CCT
Lele42g0201 42 1651002 1653123 Lele42g0201 42 1651002 1653123 ECH
Lele42g0201 42 1651002 1653123 Lele43g1155 43 19937091 19939176 hybridization
Lele42g0201 42 1651002 1653123 Lele44g1145 44 20087917 20089996 hybridization