Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele42g0198 ATGGGGAATTGTTGTAGCAACAATCTTCCTCGTCAATATTCATTGGAACAAGAGGTGAATGAGACAGAATTTGAGCATGGAGAGGACCAAAATTCCATTTCCACATACAGTGAAGGTGAAGGGCGAGTCAGGCTAAGAGGACACTCTAAGTTTGTGTCAATGTATAGCCAGCAGGGAAGAAAAGGAGTCAATCAAGATGCAATGACAGTTTGGGAGGACTTCAATGGAGAAAAAGATATGATATTTTGTGGCGTGTTCGATGGTCACGGTCCTTTTGGGCACGTGGTTGCTCGATATGTACGCAAACATTTACCCTCAAAGCTTTCTGCAGCAATCAAAACGCCAGAGCAAAAGACCTGCAAGTATAATAATGCTGCTGCAGAAGGTGAAAATCACCAAGCATTGTCCCTTGCTTCATGGGAGAACACCTTCTTGAAATCCTTCAACGACATGGATCAAGCCATTGCTCGGGACATTAACACAGACAGCTTTTACAGCGGCAGCACTGCTGTAACTGTAATCAAACAGGGTGACCAGCTGATAATTGGCAATTTGGGTGACTCTCGTGCAGTTCTTTGCACAAGGACTAGAGATCAACTCATTCCTGTTCAACTTACTGTTGACTTGAAACCAGATATTCCAAGTGAAGCTGAAAGAATCCGTAGCTATGAAGGCAGAGTTTTCGCTGAAGAAGAAGAGCCTGATGTGTACAGAATGTGGATGCCTGATGAAGATTGCCCTGGACTAGCTATGTCAAGGGCTTTTGGGGACTTTTGCTTAAAAGATTATGGCCTCATCTCAGCTCCCGATGTCTTCTATCGAAGAATAACCAAGCAGGATGAATTTGTGGTTCTGGCCACTGATGGGGTTTGGGATGCACTGACAAATGATGAAGTTATAGAAATAGTTTCTTCAGCACCAAGGAGGTCCAGAGCAGCGAGATTGTTAGTACAGAGAGCTGTGCAGGCATGGAGGTATAAATTCCCTGGTTCCAAGGTTGATGATTGTGCAGCCATATGTTTGTTTCTGAAAGACCAACCACACTTAACGAAATCTGGGGGAAATTGGCGTCATCAAAGGAAGAATTACTATGAATCTGCTAGAAATGAAGAGGACACCACAAGCTTAGATAGTTCAATGTCAAAGGATGAATGGGTTGCTCTTAAAGGGTTATCCAGAGCCAACTCTATGTCCAAACTTACTGGTCTCATCAGGGAAGTGAGCAGGAGGCGTCCATCTGAGTTTCTTGAGGGTGTTCAAATTCACTAG 1269 0.4397 MGNCCSNNLPRQYSLEQEVNETEFEHGEDQNSISTYSEGEGRVRLRGHSKFVSMYSQQGRKGVNQDAMTVWEDFNGEKDMIFCGVFDGHGPFGHVVARYVRKHLPSKLSAAIKTPEQKTCKYNNAAAEGENHQALSLASWENTFLKSFNDMDQAIARDINTDSFYSGSTAVTVIKQGDQLIIGNLGDSRAVLCTRTRDQLIPVQLTVDLKPDIPSEAERIRSYEGRVFAEEEEPDVYRMWMPDEDCPGLAMSRAFGDFCLKDYGLISAPDVFYRRITKQDEFVVLATDGVWDALTNDEVIEIVSSAPRRSRAARLLVQRAVQAWRYKFPGSKVDDCAAICLFLKDQPHLTKSGGNWRHQRKNYYESARNEEDTTSLDSSMSKDEWVALKGLSRANSMSKLTGLIREVSRRRPSEFLEGVQIH 422
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele42g0198 422 Pfam Protein phosphatase 2C 59 321 IPR001932 -
Lele42g0198 422 SUPERFAMILY PP2C-like 46 345 IPR036457 -
Lele42g0198 422 SMART PP2C_4 42 341 IPR001932 -
Lele42g0198 422 Gene3D - 44 346 IPR036457 -
Lele42g0198 422 ProSiteProfiles PPM-type phosphatase domain profile. 51 343 IPR001932 -
Lele42g0198 422 PANTHER PROTEIN PHOSPHATASE 42 341 - -
Lele42g0198 422 CDD PP2Cc 51 343 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele42g0198 Lele-ChrLele42 1630635 1632984 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele42g0198 1 362 PP2C-type Phosphatase Gene Family AT5G01700 51.064 2.09e-129 376
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele42g0198 42 1630635 1632984 Lele42g0198 42 1630635 1632984 ECH
Lele42g0198 42 1630635 1632984 Lele43g1158 43 19957785 19960300 hybridization
Lele42g0198 42 1630635 1632984 Lele44g1148 44 20110676 20113029 hybridization