Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele42g0191 ATGGAAGACCCTGTAACAGAAGGCGAAGTTAGGCTTCCTCCATTGAATCTCGTGGCAGAAGAAAAAGAAGAAAGGAAATCTGGGTTTCACTCTAATCAAGAAACCCAAGAGGAGAGAAAAGAAGGTAAAGGCGGTGGTGGCCTTATTAGGAGCTGGATGTCCACCATGGCCACTCCTCTGGGGACGAGAACAGGGGAAGCTGAAACAGAGGACGACACCAGAAACGAGATTCCCAAGAAGGAAGTTGAAGAAGGAGGAGGGATCTTGAATAATATAATTTCCAGTTTGTTTCATCAAAATGATGATGAACGAGGTCAGAAAATGGAAGGTGATGAAGAGAAGAACAAGCAAGTGAAAACAGAGGAGGAGGACAATAATGGCGGCGTCATTGAAAACATGGCTAGAGGGTTGAAGAAACACTTGAAGAGGCTCAATGCCCCAAAACACTGGATGTTGGACAAGCTGGGTGGTGCCTTTGCACCCAAGCCATCATCTGGACCTCACAAGTCAAGGGAGTGCTTGCCTCTTATCCTTATCCTGCGTAATAGGTTGAAGTATGCTCTCACCTATAGAGAAGTTATCGCCATTTTGATGCAGCGCCACGTTCTGGTTGATGGGAAGGTTAGGACAGACAAGACATATCCTGCGGGTTTCATGGATGTTGTGTCCATCCCCAAGACCAATGAAAATTTCCGTCTACTTTATGACGCAAAAGGTCGTTTCCGTCTCCAATCTATCAGGGACGAAGAGGCAAAGTTTTGTCCTTGGGTAATTCTAGCAGGACGGGATATTCTTATTCATATATCTCGTCCAATTTCAAGCTTTGCAAGGGAAAATGACACCATCAAACTGGACTTGGAAACTAACAAGATCACTGACTTCATCAAGTTCGATGTGGGCAACGTGGTCATGGTGACTGGAGGAAGGAACAGAGGCCGTGTTGGTGTTATCAAGAACAGGGAGAAGCACAAGGGAAGTTTTGAGACCATCCATGTCCAGGATGCAACTGGTCATGAATTTGCTACTCGTATGGGAAATGTCTTGACAATTGGCAAAGGCACAAAACCATGGGTTTCTCTTCCCAAAGGCCGTGGCATCAAGTTATCTATCATTGAGGAGGCTAGAAAGAGGCTGGCTGCTCCACGAGGCAACTGCATAAATTTGAGTGTTGCCTCTGCCGAAGCTTTCGATTGGGCCAGAGGTTTGAAGAAACACTTGAAGAGGCTCAATGCCCCCAAGCACTGGATGCTTGACAAACTAGGCGGCGCCTTTGCACCAAAGCCATCTTCTGGACCCCACAAGTCAAGGGAGTGCCTGCCACTCATTCTTATCCTGCGTAATAGGTTGAAGTATGCTCTCACCTATAGAGAAGTTATTGCCATTTTGATGCAGCGCCATGTTGAGGTTGATGGCAAGGTTAGGACAGACAAGACATATCCAGCTGGTTTCATGGATGTTGTCTCCATTCCGAAGACCAATGAAAACTTCCGTCTTCTTTATGATACAAAAGGTCGCTTCCGACTCCAATCTATCAGGGATGAAGAAGCAAAGTTCAAGCTTTGCAAGGTTAGATCTGTGGCTTTTGGGCAGAAGGGCATCCCCTATCTTAACACCTATGATGGGCGCACCATCCGCTACCCCGATCCCTTGATCAGGGCAAATGACACCATCAAACTGGACTTGGAAACTAACAAGATCACCGACTTCATCAAGTTCGATGTTGGTAACGTGGTCATGGTGACTGGAGGAAGGAATAGAGGCCGTGTTGGTGTTATCAAGAATAGGGAGAAGCATAAGGGAAGTTTTGAGACCATCCACGTCCAGGATGCCACCGGTCACGAGTTTGCTACTCGTATGGGAAATGTCTTCACCATCGGCAAAGGCACAAAACCATGGGTTTCTCTTCCCAAGGGCCGTGGTATCAAGTTATCTATCATTGAGGAGGCTAGAAAGAGGTTGGCAGCTCAACATGAGGCAACTGCATAA 1986 0.4678 MEDPVTEGEVRLPPLNLVAEEKEERKSGFHSNQETQEERKEGKGGGGLIRSWMSTMATPLGTRTGEAETEDDTRNEIPKKEVEEGGGILNNIISSLFHQNDDERGQKMEGDEEKNKQVKTEEEDNNGGVIENMARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDAKGRFRLQSIRDEEAKFCPWVILAGRDILIHISRPISSFARENDTIKLDLETNKITDFIKFDVGNVVMVTGGRNRGRVGVIKNREKHKGSFETIHVQDATGHEFATRMGNVLTIGKGTKPWVSLPKGRGIKLSIIEEARKRLAAPRGNCINLSVASAEAFDWARGLKKHLKRLNAPKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVEVDGKVRTDKTYPAGFMDVVSIPKTNENFRLLYDTKGRFRLQSIRDEEAKFKLCKVRSVAFGQKGIPYLNTYDGRTIRYPDPLIRANDTIKLDLETNKITDFIKFDVGNVVMVTGGRNRGRVGVIKNREKHKGSFETIHVQDATGHEFATRMGNVFTIGKGTKPWVSLPKGRGIKLSIIEEARKRLAAQHEATA 661
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele42g0191 661 ProSiteProfiles S4 RNA-binding domain profile. 439 501 - -
Lele42g0191 661 Pfam S4 domain 444 487 IPR002942 GO:0003723
Lele42g0191 661 Pfam S4 domain 179 222 IPR002942 GO:0003723
Lele42g0191 661 CDD KOW_RPS4 297 351 IPR041982 -
Lele42g0191 661 MobiDBLite consensus disorder prediction 1 74 - -
Lele42g0191 661 Hamap 30S ribosomal protein S4e [rps4e]. 404 635 IPR000876 GO:0003735|GO:0005840|GO:0006412
Lele42g0191 661 CDD S4 183 243 - -
Lele42g0191 661 SMART kow_9 571 598 IPR005824 -
Lele42g0191 661 SMART kow_9 296 323 IPR005824 -
Lele42g0191 661 FunFam 40S ribosomal protein S4 297 367 - -
Lele42g0191 661 Hamap 30S ribosomal protein S4e [rps4e]. 139 360 IPR000876 GO:0003735|GO:0005840|GO:0006412
Lele42g0191 661 Gene3D - 519 569 IPR038237 -
Lele42g0191 661 SMART s4_6 174 238 IPR002942 GO:0003723
Lele42g0191 661 SMART s4_6 439 503 IPR002942 GO:0003723
Lele42g0191 661 CDD KOW_RPS4 572 626 IPR041982 -
Lele42g0191 661 FunFam 40S ribosomal protein S4 398 514 - -
Lele42g0191 661 Pfam 40S ribosomal protein S4 C-terminus 609 656 IPR032277 -
Lele42g0191 661 Pfam 40S ribosomal protein S4 C-terminus 334 380 IPR032277 -
Lele42g0191 661 MobiDBLite consensus disorder prediction 16 45 - -
Lele42g0191 661 MobiDBLite consensus disorder prediction 97 125 - -
Lele42g0191 661 FunFam 40S ribosomal protein S4 572 642 - -
Lele42g0191 661 FunFam 40S ribosomal protein S4 519 569 - -
Lele42g0191 661 ProSitePatterns Ribosomal protein S4e signature. 405 419 IPR018199 -
Lele42g0191 661 ProSitePatterns Ribosomal protein S4e signature. 140 154 IPR018199 -
Lele42g0191 661 ProSiteProfiles S4 RNA-binding domain profile. 174 237 - -
Lele42g0191 661 Gene3D - 572 642 IPR014722 -
Lele42g0191 661 Gene3D - 297 367 IPR014722 -
Lele42g0191 661 Gene3D - 133 249 IPR036986 GO:0003723
Lele42g0191 661 Gene3D - 398 514 IPR036986 GO:0003723
Lele42g0191 661 PANTHER 30S/40S RIBOSOMAL PROTEIN S4 400 651 IPR000876 GO:0003735|GO:0005840|GO:0006412
Lele42g0191 661 CDD S4 448 508 - -
Lele42g0191 661 Pfam RS4NT (NUC023) domain 400 436 IPR013843 -
Lele42g0191 661 Pfam RS4NT (NUC023) domain 135 171 IPR013843 -
Lele42g0191 661 Pfam KOW motif 299 332 IPR005824 -
Lele42g0191 661 Pfam KOW motif 574 607 IPR005824 -
Lele42g0191 661 MobiDBLite consensus disorder prediction 100 125 - -
Lele42g0191 661 FunFam 40S ribosomal protein S4 133 249 - -
Lele42g0191 661 Pfam Ribosomal family S4e 227 253 IPR013845 -
Lele42g0191 661 Pfam Ribosomal family S4e 492 566 IPR013845 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele42g0191 Lele-ChrLele42 1569667 1577751 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele42g0191 399 659 Cytoplasmic Ribosomal Protein Gene Family AT5G58420 91.188 1.96e-179 508