Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele42g0186 ATGGTCTACACTCTTTTGCAATTTATATTTCGTGAGAGATCAAGAAGAGAAACATTCTGTATCATGAATGTGGATTTAAATGTTGCCATAGACAGATATCTGGGCATCCGTTGGGGAGAGACAATGAAGCAAGTGATAGGAACGGTGGTGTCAAACAAGATGCAGAAATCAGTGGTGGTGGCAGTGGATAGGTTATTCCACCACAAAGTATACAACCGTTATATTAAACGTACCTCTAAATTTATGGCACATGACGAGAACAATGTTTGTAACACCGGTGATCGAGTTCGACTTGATCCTTCTAGGCCTTTGAGCAAGCATAAGCATTGGATTGTTGCTGAAATTATTAAGAAAGCAAGAATTTATGCACCACCATCTGCACCTGTGACTAAAGAGCCAAGCTCCAGCTCTGAAGCATCTGCTTCCTAG 429 0.4126 MVYTLLQFIFRERSRRETFCIMNVDLNVAIDRYLGIRWGETMKQVIGTVVSNKMQKSVVVAVDRLFHHKVYNRYIKRTSKFMAHDENNVCNTGDRVRLDPSRPLSKHKHWIVAEIIKKARIYAPPSAPVTKEPSSSSEASAS 142
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele42g0186 142 Gene3D - 41 139 IPR012340 -
Lele42g0186 142 PANTHER 40S RIBOSOMAL PROTEIN S11 FAMILY MEMBER 41 123 IPR000266 GO:0003735|GO:0005840|GO:0006412
Lele42g0186 142 TIGRFAM uS17_bact: ribosomal protein uS17 43 112 IPR019984 GO:0003735|GO:0005840|GO:0006412
Lele42g0186 142 FunFam 30S ribosomal protein S17 42 142 - -
Lele42g0186 142 Hamap 30S ribosomal protein S17 [rpsQ]. 42 117 IPR019984 GO:0003735|GO:0005840|GO:0006412
Lele42g0186 142 SUPERFAMILY Nucleic acid-binding proteins 42 130 IPR012340 -
Lele42g0186 142 PRINTS Ribosomal protein S17 family signature 61 84 IPR000266 GO:0003735|GO:0005840|GO:0006412
Lele42g0186 142 PRINTS Ribosomal protein S17 family signature 103 110 IPR000266 GO:0003735|GO:0005840|GO:0006412
Lele42g0186 142 PRINTS Ribosomal protein S17 family signature 93 103 IPR000266 GO:0003735|GO:0005840|GO:0006412
Lele42g0186 142 Pfam Ribosomal protein S17 47 114 IPR000266 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele42g0186 Lele-ChrLele42 1543501 1544210 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele42g0186 47 116 Cytoplasmic Ribosomal Protein Gene Family AT4G30800 40.845 1.92e-06 43.1