Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele42g0178 ATGAGATCAATAATGGCGGAGTTGCAGAAAAGCTTCAAAGCTTCTGTGTTAAGTGAGAGTGTTCTTCTCTTAGTATTACTATTATTATGCCTTCAGATCACAGTAAGACCTTCCATGGCGGTGGCCACACCAGTACCAGTACCAGTAGGAGTCATTCTTGATCTGAATTCAACACTGGGTTTAATGGTTAACCACAGCCTCGCCTTCGCCGTCGAAGATTACTATTCCAAGCATACGGATACAGCCACCAAGATCAACCTTATAGTCCGGAATGTTCCTCCGAACGATGTCGTTGCTGCGGCAGAAAATGCTTCTGATCTAATAGAGAAAGACAAGGTGCGTGCCATATTGGGGCCCCGAAATTCAGAACAAGCAAGGTATATAGTTCAACTTGGTGAGGAACTCCAAGTACCAGTTATTTGGTTTCCCATAACTGGTCCTTCTCTTTTGCCACCTCCTTCCCCATCCTTCATCTACTTCAATCAAGGCCTTCATTGCTGTCAGTTCCATGCTATAGCTGACACTATTAAAGCTCTTGGGTGGCAATCAGTCATCCCCATTTATGAACAGACCGAATATGGCAGTTACCTTATTCCATGCCTCACCAATGTCTTTAAATATATGGGCATACAAATGGTTAACGTAACTGCCATTGATTCTGATTCAAACAGTTCTGAAATTTACTCCATTCTTGGTAAGTTAAACAACATGCGAAGACATGTATTTCTTGTCCATATGAGCATGGATCTCGGAACAAAATTTATTAGGTATGCACAATACAGAAATATGATGGATGAAGGATATGCTTGGATACTTACCCAAGAGCTATCTTCTTTGACAGATCCTAGAGTGCCGATTGTGAGAATATCGCATAATGGCCAAGGCCAATCTTCGACATATCCCACGAGTAAATTTTTTAGAGATGCGGTTCCTTTGAAAGGATACATGCAAGGTGCATTGGTAGTGAGGCCAATGGATTTGGTTTCCAAAAAAGAAAGAACTTGGCGTACCTCTAGAGAGAGAAGTTTCCGGCTTAAGTTCAATTTCGAAAGTAGCCTAACAATCTATGGGTGGTGGGCTTATTACACAATCGAAGCATTGGCTAGGGCACTAGAGAAGGCAGGCGCAGAACATGGCGCAAGACTTCGCAGAGAAATTTGGTCTACTAGTTTCACAGGCGACTCAGGGATAAATTTTACTTTAGTTAATGGACAACTAGACCAATCGGAGTATGAAGTATACAATGTGATAGGACAAAGAGAAAGGATCATCGGAAATTGGAGCCCTAAAACTAGACTTGTTAAAAATTTTAGTGAAGTTGGGAAGACATCTGGTGAGTACCCACTAAAGTATCCATTGTGGCCAGGTGACACATTGGATAAGCCACCAAAGTTGAGAATTGGAGTCCCAAGAACAAATTTTTCTCCTGAATTTGTCAATGTAGATTTATATAATTCTAGTAAGCCGCTGATATATGGCTTTGCTATTAATGTATTCTTAAAAGCTCTCGATGTTCTGCCATTTCCGTTCAATTATTATGAGTTTGTTCCCTTGCCGAACGTAAGTAGAAGCGTTCCCATGACCTATGACGATATTCTCTGCCTCCAAATGGAAGTCGAGGGTCTTGATGCTATAATTGGAGACATCACAGTTGTGGCAAATCGAACAAAATGTGTTGATTTCACGTTGCCGTATTTAGATTCAAGTGTAGCAATGGTGGTAAATGTGAAGAAGGCCTCCAGAAGTAAGGGAATCCTCTTGAAACCATTCGAAAGGTCACTATGGTTAATTCTTGGGGGGATTTTTGCGGCTGCAACTATTACCATAATTATATTAGAAAGAAACAAAGCCAGCGAAAACAACCAAACCAACGAAAGAAACAAAACCAACGAATTTCTGTTCAACCCCTTCCTTGTTTACAAGATCGATGTTATAGAGGAGTTTGAAAGCGGAGCTGCAAAATGGATGGTGATACTGACGTCATTCCTATTCATCTTGGTGGTTCAAGTTTACACTGCGAATTTAACTTCAATTTTAACGCAAGAACAAATCAAAGAGCCTTTTTTTAAGGACGAAAATGAGACTAAAAATAGCAATGTGTCTGTGGGATATCGAAATGGTTCATGGGTGGAAGGGTTTCTGATTGAACAAATAGGATTCAACTCGTCTCGGTTAAAGCCTTTAGCAAGTCACGAAGAGTATCATTCATCATTGTCAAATGGAACAGTGGGTGCTATTTTTGATGAAACTCCTTATCTCACGCTTTTCCTCTCCAAATATAAGTCTCACTTTATAATGACAGGATCAATGTTCAAAACTGGTGGATTTGCCTTTGCATTCCCAAATAAGTCTAGCCTGAAGCAGGTTTTCAAGAAAGCTAAGGAATAA 2388 0.4049 MRSIMAELQKSFKASVLSESVLLLVLLLLCLQITVRPSMAVATPVPVPVGVILDLNSTLGLMVNHSLAFAVEDYYSKHTDTATKINLIVRNVPPNDVVAAAENASDLIEKDKVRAILGPRNSEQARYIVQLGEELQVPVIWFPITGPSLLPPPSPSFIYFNQGLHCCQFHAIADTIKALGWQSVIPIYEQTEYGSYLIPCLTNVFKYMGIQMVNVTAIDSDSNSSEIYSILGKLNNMRRHVFLVHMSMDLGTKFIRYAQYRNMMDEGYAWILTQELSSLTDPRVPIVRISHNGQGQSSTYPTSKFFRDAVPLKGYMQGALVVRPMDLVSKKERTWRTSRERSFRLKFNFESSLTIYGWWAYYTIEALARALEKAGAEHGARLRREIWSTSFTGDSGINFTLVNGQLDQSEYEVYNVIGQRERIIGNWSPKTRLVKNFSEVGKTSGEYPLKYPLWPGDTLDKPPKLRIGVPRTNFSPEFVNVDLYNSSKPLIYGFAINVFLKALDVLPFPFNYYEFVPLPNVSRSVPMTYDDILCLQMEVEGLDAIIGDITVVANRTKCVDFTLPYLDSSVAMVVNVKKASRSKGILLKPFERSLWLILGGIFAAATITIIILERNKASENNQTNERNKTNEFLFNPFLVYKIDVIEEFESGAAKWMVILTSFLFILVVQVYTANLTSILTQEQIKEPFFKDENETKNSNVSVGYRNGSWVEGFLIEQIGFNSSRLKPLASHEEYHSSLSNGTVGAIFDETPYLTLFLSKYKSHFIMTGSMFKTGGFAFAFPNKSSLKQVFKKAKE 795
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele42g0178 795 Pfam Receptor family ligand binding region 64 418 IPR001828 -
Lele42g0178 795 Gene3D - 44 170 - -
Lele42g0178 795 Pfam Ligand-gated ion channel 593 688 IPR001320 GO:0015276|GO:0016020
Lele42g0178 795 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 48 786 - -
Lele42g0178 795 SMART GluR_14 466 792 IPR001320 GO:0015276|GO:0016020
Lele42g0178 795 Gene3D - 587 710 - -
Lele42g0178 795 SUPERFAMILY Periplasmic binding protein-like II 460 793 - -
Lele42g0178 795 Pfam Bacterial extracellular solute-binding proteins, family 3 542 793 IPR001638 -
Lele42g0178 795 Gene3D - 171 349 - -
Lele42g0178 795 Gene3D - 461 586 - -
Lele42g0178 795 SUPERFAMILY Periplasmic binding protein-like I 46 428 IPR028082 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele42g0178 Lele-ChrLele42 1465104 1470353 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele42g0178 26 793 Ion Channels AT2G29120 31.297 1.85e-109 355