Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele42g0172 ATGGAAGGAAGAAAGGAAGGCTCGGAATGCTCCAAGACATGCCCTTCTAGTTATAATAATTGCCAAGAATTATTAGAAGAAGAGTGCGAGAGCAAGAGCAAGACCGATGAAGAGGAAGAGGAAGGTGAGAAGAATATGAATAATAATGGCGGAAGCTCAAGCAATAGCACAGTGGAAGAGACGACAGAGAAGAAGCCGTCAGTGAGGCCTTATGTGAGATCCAAGATGCCGAGGCTCCGATGGACTCCTGATCTTCACCTTCGCTTTGTTCATGCCGTTCAAAGGCTTGGAGGAGAAGAGAGAGCAACACCAAAGTTGGTTCTCCAATTAATGAACATCAAAGGCTTGAGTATTGCGCATGTTAAGAGTCATCTTCAGATGTATAGGAGCAAGAAGGTAGATGATCCAAGCCAAGTAATGGCTGATCATCATAGGCACCTTGTAGAAAGTGGAGACAGAAATATCTACAATCTCAGCCAAATTCCCATGCTTCAAGGTTATAATAATCCCTGCCAAACTTCAACCTTCAGATATGGATATGGGGATAATGCTTCTTTGGGTGTGTATAAAAAAATGGTTCGTAGCCCTTTCATGGGTCGGAGTCTGATTGATCATCATGAATCCGCGTCGTCTGGGTTTCACAGCATTTTCCAGGTGGACCCTTCAAATTTTCCGAAGCAATCATCATCATCATCAACAAATAATAAAGATCATCAAGTTCTCTCATTAGGTAGCCATCATCACGATCCCATGTACAATGGAACCAGATTGAGCCACCAGCATAACACTGATCTTAACTCATTCATGACCCATATGGGACCAACAAGATCAGAAGAACGGTTTCTTCCTATTATGAAGGATCATCATCAGGACCAAACAAAGACGACGCTGAAAAGAAAGTTTTGTGAAGATCAAATGGATCATCATCTTCTTCATCATAATCACCACCTTGATTTGGATCTATCACTCAAGTTAAATTCAAGGGTTGATATTGATAGGGCACACCAGAAGAATCATTTGGAGGAGAATGATCATGAAGTTGATAGCAACCTCTCGTTGTCTTTGTATTCTCAAATTTCCTCGTTTTCTAATACTACTACTACTACTAATAATAATAATGCTAGAAACAGCACCAAGGAAGGAGAACACAGTGATGATAAGGAGAAATCAAGGAGGGAAAGGGCTAGTACACTGGATCTGACTATATGA 1209 0.4127 MEGRKEGSECSKTCPSSYNNCQELLEEECESKSKTDEEEEEGEKNMNNNGGSSSNSTVEETTEKKPSVRPYVRSKMPRLRWTPDLHLRFVHAVQRLGGEERATPKLVLQLMNIKGLSIAHVKSHLQMYRSKKVDDPSQVMADHHRHLVESGDRNIYNLSQIPMLQGYNNPCQTSTFRYGYGDNASLGVYKKMVRSPFMGRSLIDHHESASSGFHSIFQVDPSNFPKQSSSSSTNNKDHQVLSLGSHHHDPMYNGTRLSHQHNTDLNSFMTHMGPTRSEERFLPIMKDHHQDQTKTTLKRKFCEDQMDHHLLHHNHHLDLDLSLKLNSRVDIDRAHQKNHLEENDHEVDSNLSLSLYSQISSFSNTTTTTNNNNARNSTKEGEHSDDKEKSRRERASTLDLTI 402
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele42g0172 402 MobiDBLite consensus disorder prediction 27 45 - -
Lele42g0172 402 MobiDBLite consensus disorder prediction 46 61 - -
Lele42g0172 402 MobiDBLite consensus disorder prediction 378 402 - -
Lele42g0172 402 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL7-LIKE 56 275 - -
Lele42g0172 402 MobiDBLite consensus disorder prediction 363 402 - -
Lele42g0172 402 Gene3D - 76 133 - -
Lele42g0172 402 MobiDBLite consensus disorder prediction 363 377 - -
Lele42g0172 402 Pfam Myb-like DNA-binding domain 79 129 IPR001005 -
Lele42g0172 402 MobiDBLite consensus disorder prediction 27 71 - -
Lele42g0172 402 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 77 132 IPR006447 GO:0003677
Lele42g0172 402 SUPERFAMILY Homeodomain-like 75 131 IPR009057 -
Lele42g0172 402 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 73 133 IPR017930 -
Lele42g0172 402 FunFam Myb family transcription factor 75 133 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele42g0172 Lele-ChrLele42 1408048 1409748 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele42g0172 68 162 G2-like Transcription Factor Family AT2G42660 57.798 1.30e-33 124
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Lele42g0172 Myb_DNA-binding 1.9e-07 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele42g0172 42 1408048 1409748 Lele42g0172 42 1408048 1409748 ECH
Lele42g0172 42 1408048 1409748 Lele43g1190 43 20282761 20284454 hybridization
Lele42g0172 42 1408048 1409748 Lele44g1179 44 20327781 20329498 hybridization