Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele42g0149 ATGGAAATGGCTTCTAGTCCGCGCACGGTGGAGGAGATCTTCAAGGATTATGGTGCTCGAAGAGCCGGTGTTGTTCGTGCTTTGACTCAAGATGTGGATGAATTTTACGGACTCTGTGATCCAGAAAAGGAGAATTTGTGCCTTTATGGACATCCAAATGAAACCTGGGAAGTAACTCTGCCAGCAGAGGAAGTTCCCCCGGAGCTTCCTGAGCCAGCTCTTGGGATCAATTTTGCTAGGGATGGCATGATTCGCAAGGACTGGCTTTCTCTTGTCGCTGTTCACAGTGATTCATGGCTGCTTTCTGTGGCATTTTATCTTGGAGCCCGTCTCAACCGCAATGAAAGGAAGCGTTTATTTAGCTTGATCAATGATCTTCCCACTGTCTTTGAAGTTGTGACTGAGAGAAAGGCTATAAAGGACAAGCCAACTGTGGACAGTGGAAGCAAGTCCAGGGGAAGCACCAAGAGATCAAGTGATGGGCAAGTTAAAAGCAATCCGAAGTTTGCAGATGAAGGTTATGAGGAGGATGAAGATGAGCATAGCGAAACCCTTTGCGGTAGCTGTGGTGGAAATTACAATGCAGACGAATTTTGGATCGGCTGCGATGTCTGTGAGAGGTGGTTCCACGGGAAATGTGTGAAGATTACCCCTGCCAAGGCTGAGAGCATAAAGCAATACAAATGTCCATCCTGCATGAGGAGGGGCAAGCCCTAG 717 0.4784 MEMASSPRTVEEIFKDYGARRAGVVRALTQDVDEFYGLCDPEKENLCLYGHPNETWEVTLPAEEVPPELPEPALGINFARDGMIRKDWLSLVAVHSDSWLLSVAFYLGARLNRNERKRLFSLINDLPTVFEVVTERKAIKDKPTVDSGSKSRGSTKRSSDGQVKSNPKFADEGYEEDEDEHSETLCGSCGGNYNADEFWIGCDVCERWFHGKCVKITPAKAESIKQYKCPSCMRRGKP 238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele42g0149 238 SMART PHD_3 185 233 IPR001965 -
Lele42g0149 238 MobiDBLite consensus disorder prediction 148 165 - -
Lele42g0149 238 MobiDBLite consensus disorder prediction 141 176 - -
Lele42g0149 238 Pfam PHD-finger 186 234 IPR019787 -
Lele42g0149 238 Pfam Alfin 9 134 IPR021998 GO:0006355|GO:0042393
Lele42g0149 238 FunFam PHD finger alfin-like protein 178 234 - -
Lele42g0149 238 CDD PHD_AL_plant 185 235 IPR044104 -
Lele42g0149 238 PANTHER CPG BINDING PROTEIN 6 234 IPR045104 GO:0006355|GO:0042393
Lele42g0149 238 ProSiteProfiles Zinc finger PHD-type profile. 183 235 IPR019787 -
Lele42g0149 238 ProSitePatterns Zinc finger PHD-type signature. 186 232 IPR019786 -
Lele42g0149 238 SUPERFAMILY FYVE/PHD zinc finger 174 236 IPR011011 -
Lele42g0149 238 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 183 233 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele42g0149 Lele-ChrLele42 1182121 1184891 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele42g0149 4 232 Alfin-like Transcription Factor Family AT5G05610 79.565 4.07e-120 340
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Alfin-like Lele42g0149 Alfin 8.3e-68 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele42g0149 42 1182121 1184891 Lele43g1209 43 20440854 20443593 hybridization
Lele42g0149 42 1182121 1184891 Lele44g1202 44 20543079 20545883 hybridization