Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele42g0142 ATGAGCAAGAAAAAGAGAAATTTCGCTCCGATTGCAGAAACAGGTAGATGTGAACTCACTTATGCTGCTGCTTGCATTTTTGTTTCACTTGCTGCCTTTGCTGTTCAGATATTCTGAAACAGCCGTATAGGATTTTGGAGTGCGTTTGCTTGGCTTGCTGGATTGACTGTGTTCATTGCCATCTTGTCTCAATTTGTGGTGGACACAATTGAGGGTGCTTCAGATTCATGGAGCCTGTCTATCAGCTTCCTTAGCATCATCTTGTTGCCAATAGTTGGCAATGCAACTGAACATGCAGGAGCAGTCATATTTGCCTTGAAGAACAAGCTAGACATCTCATTAGGTGTTGCATTAGGTTCTTCAACTCAGATTTCCTTGTTTGTGGTTCCCCTGTGCATGGTAATTGCTTGGATAATGGGTATCGAAATGGACCTTGACTTCAATCTCCTTGAGACCGGTTCTCTTGCTTTGGCTATTTTAGTCCCATCCTTCACTTTACAGATCTATGAATTGCATAGCAAAAGCTACTAA 531 0.4218 MSKKKRNFAPIAETGRCELTYAAACIFVSLAAFAVQIFXNSRIGFWSAFAWLAGLTVFIAILSQFVVDTIEGASDSWSLSISFLSIILLPIVGNATEHAGAVIFALKNKLDISLGVALGSSTQISLFVVPLCMVIAWIMGIEMDLDFNLLETGSLALAILVPSFTLQIYELHSKSY 176
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele42g0142 176 PANTHER VACUOLAR CALCIUM ION TRANSPORTER 40 167 IPR004713 GO:0006812|GO:0008324|GO:0016020
Lele42g0142 176 Pfam Sodium/calcium exchanger protein 48 161 IPR004837 GO:0016020|GO:0055085
Lele42g0142 176 Gene3D - 7 174 IPR044880 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele42g0142 Lele-ChrLele42 1129820 1133464 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele42g0142 43 168 Antiporters AT3G51860 76.190 2.38e-64 202
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele37g1318 37 22238515 22239942 Lele42g0142 42 1129820 1133464 CCT
Lele42g0142 42 1129820 1133464 Lele42g0142 42 1129820 1133464 ECH
Lele42g0142 42 1129820 1133464 Lele43g1216 43 20495459 20498443 hybridization