Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele42g0139 ATGAAACTGACAAGGTAAAGAAGAAGAAAACAAATGCCGAGGAGGTCTTTCAGGGATTCCCTTAAAGCTCTTGAAGCTGATATTCACTTCGCCAATGCCCTAGCTTCTGATTATCCGAGCGACTTCGATGGTGCCTGCCTCCAAATGAGATTATCATACAGTTCAGCTGCTCAGTTTTTCCTGATACTGTTTAAGTGGGCCGATTGCCACCTTGCTGGAGCCTTTGGCTTGCTTAGAATTCTCATATACAAGGCATATGACAATGGGAAGACAACAATGAAAGTTTATGAAAGAAAAGCAAGTCTGAAGGAGTTCTATGGTGTAATCTTTCCCTCTTTATTGCAACTACAAAGAGGAATAACTGAAGGTGAAGACAGACGACAGAAAGATTTATGTGCTACTAAGTATAAGTCAGAAGATGCAACAAACAAAAGAAAGATTTCTGATATTGACTTAGAGAGAGAAAATGAATGTGACATTTGCATGGAGATGAACAGCAGGGTTGTGTTACCTATATGCAGCCACTCAATGTGCATAAAATGTTACCAAGACTGGTGTGCGCGATCTCAATCTTGCCCGTTCTGTCGGGGAAATCTGACAAGAGTTAACTCAGGTGACCTGTGGATGTACATGAGCAGCAATGAGATAGATGACTTGGATTCAATCATAAAGGAGAATGTAAATAGGCTATTTATGTACATTGAGAAGTTGCCTCATGTAGTTCCAGATCCTATTTTCGCATATTATCCTCAGCATTTAAATGGGGTCCAACCATCTTCCATCTGCGCTTTGCAAGGCGGTACTGTTCGGAAGAACATGGCCATCGTTGGAGTCCTTGCCTTACAGGGATCTTTCAACGAACACATAGCAGCCCTTAGGAGGATAGGGGTGAAAGGGATCGAGATTAGGAAGCCAGAACAGCTTCGCGATGTCACTTCTCTTATCATTCCTGGAGGAGAAAGCACCACCATGGCTAAGCTCGCTGAGTTCCACAACCTGTTTCCTGCGCTAAGAGAGTTTGTTAAGATGGGAAGACCTGTTTGGGGAACGTGTGCAGGTCTTATATTCTTGGCAAATAAAGCGACAGGACAGAAGACTGGTGGACAACAGTTGGTTGGAGGACTTGATTGCACTATCCATAGAAATTTCTTTGGCAGCCAGATTCAAAGCTTCGAAGCCGAGCTTTCTGTACCAGAGCTTGCATCCAAAGAAGGTGGCCCCGAAACATTTCGTGGGATATTTATTCGCGCTCCTGCAATCCTTGAAGTAGGACCAGAAGTTGAAATACTGGCTGATTTCCCTGCCCCTTCTAAGAGATTGTTGGGTTCAGATCTCTCTCTTGAAGATCAAAAGGAGAATGTTGAGGGAGAAAGTAAAGTTATAGTTGCTGTTAGACAAGGGAAAATACTAGGGACAGCTTTCCATCCTGAATTAACAGCAGATACACGATGGCATAGTTATTTCTTAAAGATGGGGAATGAAATTACAGAGGAGGCCTCCTCAAATAGCTGTGTCCCAGTTGAAGTGAATGGTTGTTGTAAACAGCCGCTGCCACAGATTGACCTTCCTATCTTTCATTAG 1581 0.4326 MKLTRXRRRKQMPRRSFRDSLKALEADIHFANALASDYPSDFDGACLQMRLSYSSAAQFFLILFKWADCHLAGAFGLLRILIYKAYDNGKTTMKVYERKASLKEFYGVIFPSLLQLQRGITEGEDRRQKDLCATKYKSEDATNKRKISDIDLERENECDICMEMNSRVVLPICSHSMCIKCYQDWCARSQSCPFCRGNLTRVNSGDLWMYMSSNEIDDLDSIIKENVNRLFMYIEKLPHVVPDPIFAYYPQHLNGVQPSSICALQGGTVRKNMAIVGVLALQGSFNEHIAALRRIGVKGIEIRKPEQLRDVTSLIIPGGESTTMAKLAEFHNLFPALREFVKMGRPVWGTCAGLIFLANKATGQKTGGQQLVGGLDCTIHRNFFGSQIQSFEAELSVPELASKEGGPETFRGIFIRAPAILEVGPEVEILADFPAPSKRLLGSDLSLEDQKENVEGESKVIVAVRQGKILGTAFHPELTADTRWHSYFLKMGNEITEEASSNSCVPVEVNGCCKQPLPQIDLPIFH 526
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele42g0139 526 CDD GATase1_PB 276 489 IPR002161 GO:0004359|GO:0042819|GO:0042823
Lele42g0139 526 Gene3D - 272 503 IPR029062 -
Lele42g0139 526 SUPERFAMILY Class I glutamine amidotransferase-like 275 491 IPR029062 -
Lele42g0139 526 Pfam Zinc finger, C3HC4 type (RING finger) 155 201 - -
Lele42g0139 526 ProSitePatterns Zinc finger RING-type signature. 173 182 IPR017907 -
Lele42g0139 526 TIGRFAM PLP_synth_Pdx2: pyridoxal 5'-phosphate synthase, glutaminase subunit Pdx2 276 432 IPR002161 GO:0004359|GO:0042819|GO:0042823
Lele42g0139 526 FunFam Predicted protein 273 502 - -
Lele42g0139 526 Pfam SNO glutamine amidotransferase family 278 491 IPR002161 GO:0004359|GO:0042819|GO:0042823
Lele42g0139 526 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 116 227 IPR013083 -
Lele42g0139 526 SMART ring_2 158 195 IPR001841 -
Lele42g0139 526 ProSiteProfiles PdxT/SNO family profile. 275 493 IPR002161 GO:0004359|GO:0042819|GO:0042823
Lele42g0139 526 Hamap Pyridoxal 5'-phosphate synthase subunit PdxT [pdxT]. 276 491 IPR002161 GO:0004359|GO:0042819|GO:0042823
Lele42g0139 526 ProSiteProfiles Zinc finger RING-type profile. 158 196 IPR001841 -
Lele42g0139 526 SUPERFAMILY RING/U-box 142 201 - -
Lele42g0139 526 PANTHER PYRIDOXAL 5'-PHOSPHATE SYNTHASE SUBUNIT SNO 275 495 IPR002161 GO:0004359|GO:0042819|GO:0042823
Lele42g0139 526 FunFam RING/U-box superfamily protein 139 205 - -
Lele42g0139 526 ProSiteProfiles Glutamine amidotransferase type 1 domain profile. 275 498 - -
Lele42g0139 526 ProSitePatterns PdxT/SNO family family signature. 313 323 IPR021196 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele42g0139 Lele-ChrLele42 1107207 1115105 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele38g1204 38 23027246 23032568 Lele42g0139 42 1107207 1115105 CCT
Lele39g0101 39 681991 698553 Lele42g0139 42 1107207 1115105 CCT
Lele40g1145 40 21518048 21522076 Lele42g0139 42 1107207 1115105 CCT
Lele42g0139 42 1107207 1115105 Lele42g0139 42 1107207 1115105 ECH
Lele42g0139 42 1107207 1115105 Lele44g1212 44 20611651 20614830 hybridization