Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele42g0119 ATGAACAGGGGAATTGAAGTTTTCTCTCCAGCTTCTTACCTTCAAAACTCCAATTGGTTGTTCCAAGAGAGCAAAGGAACAAAATGGACCGCAGAAGAGAATAAGCGGTTTGAGGATGCTTTGGCCTTGTACGACAAGGATACTCCAGATCGTTGGTTGAAAGTTGCAGCTAAGGTTCCAGGGAAGACAGTGGGAGATGTGATTAGGCAGTACAAACAACTTGAAGAAGATGTTAGTGTCATTGAAGCAGGGTTGATCCCAGTCTCTGAGTATGACGATACCAGTTCTTTCACTTTGGAATGTTTCAATAACCAAAGCTTTGATGATTTCAAGCCCTTCTATACTGTTGGTGAGAAAAGAGGTTCTTCCACTAGACCATCTGAGCAGGAAAGGAAAAAAGGAGTGCCATGGACTGAAGAAGAGCACAGGCAATTTCTGATGGGGCTGAAGAAGTATGGTAAAGGGGACTGGAGAAACATATCTCGTAATTTTGTGACCACAAGGACACCCACTCAGGTCGCTAGTCATGCTCAGAAGTATTTCATCAGGCAGCTTTCAGGAGACAAGGACAAGAGGAGATCAAGCATCCATGACATCACAATTGTCAACCTTGAAACCAAGTCGTCGTCATCTCCTTCATCAGACAGCTCAGTGAAGGTTGTAAATGATCTGCCCAAGAATCCAAATTTCTCTACCATTGTTAAACAGGAGTATAATGACTCAAATTTTCTGTACGAGTCCATGCCAATGATTTTCAATTCACCAAATGGAAACATGTTCATGCCACCCTATTTCGGGATTTCTTCAGTTGGATCTGGACCTCATCATCAGGAGCAGTGTTTACTCAGAGGTTCTCTCTAA 861 0.4297 MNRGIEVFSPASYLQNSNWLFQESKGTKWTAEENKRFEDALALYDKDTPDRWLKVAAKVPGKTVGDVIRQYKQLEEDVSVIEAGLIPVSEYDDTSSFTLECFNNQSFDDFKPFYTVGEKRGSSTRPSEQERKKGVPWTEEEHRQFLMGLKKYGKGDWRNISRNFVTTRTPTQVASHAQKYFIRQLSGDKDKRRSSIHDITIVNLETKSSSSPSSDSSVKVVNDLPKNPNFSTIVKQEYNDSNFLYESMPMIFNSPNGNMFMPPYFGISSVGSGPHHQEQCLLRGSL 286
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele42g0119 286 CDD SANT 136 181 IPR001005 -
Lele42g0119 286 FunFam transcription factor MYB1R1 135 186 - -
Lele42g0119 286 ProSiteProfiles SANT domain profile. 137 185 IPR017884 -
Lele42g0119 286 SUPERFAMILY Homeodomain-like 27 82 IPR009057 -
Lele42g0119 286 PANTHER DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 23 247 IPR043363 -
Lele42g0119 286 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 132 184 IPR006447 GO:0003677
Lele42g0119 286 CDD SANT 28 74 IPR001005 -
Lele42g0119 286 MobiDBLite consensus disorder prediction 123 137 - -
Lele42g0119 286 ProSiteProfiles SANT domain profile. 24 79 IPR017884 -
Lele42g0119 286 Pfam Myb-like DNA-binding domain 136 181 IPR001005 -
Lele42g0119 286 Pfam Myb-like DNA-binding domain 28 74 IPR001005 -
Lele42g0119 286 MobiDBLite consensus disorder prediction 118 137 - -
Lele42g0119 286 Gene3D - 135 185 - -
Lele42g0119 286 SMART sant 133 183 IPR001005 -
Lele42g0119 286 SMART sant 25 77 IPR001005 -
Lele42g0119 286 SUPERFAMILY Homeodomain-like 130 184 IPR009057 -
Lele42g0119 286 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 129 185 IPR017930 -
Lele42g0119 286 FunFam Transcription factor SRM1 21 88 - -
Lele42g0119 286 Gene3D - 21 88 - -
Lele42g0119 286 ProSiteProfiles Myb-like domain profile. 129 181 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele42g0119 Lele-ChrLele42 924147 925429 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lele42g0119 Myb_DNA-binding 2.1e-12 CL0123