Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele42g0108 ATGGTTGCCGATAGCAAGTCCAAATCTGATATCTCCTTCGCTGGAACTTTTGCCAGCAGTGCTTTAGCTGCATGTTTTGCTGAGATATGCACAATCCCTTTGGACACTGCTAAAGTGAGGCTTCAGATCCAAAAACAAGCAGTGGCTGGTGAAGCAGTGACCGTACCTAAATATAGGGGTATGCTGGGTACAGTTGGTACCATTGCCAGGGAAGATGTCTATCCGCTCTCTGGAAGGGCATTGTGCCAGGACTACATCGCCAATGTCAAGAATTTATATGTTGGAAAGGATTTCGTAGGAGATGTTCCATTAACAAAGAAAATTCTTGCTTCCCTTACTATTGGTGCTGTGGCAATTACGATAGCAAATCCAACCGACCTTGTAAAAGTTAGACTTCAAGCTGAAGGAAAATTACCTCCTGGTGTGCCCAGACGGTACTCTGGATCATTAAATGCTTATTCCACAATTGTGAGACAGGAAGGAATTGGGGCTCTTTGGACTGGGCTTGGCCCCAACGTAGCAAGAAATGCTATTATTAACGCAGCAGAACTAGCCAGCTATGATCAAGTGAAACAGACCATTTTGAAAATTCCAGGCTTCACAGACAATGTTGTAACTCATCTACTTGCTGGTCTAGGGGCAGGGTTCTTTGCTGTCTGCATTGGCTCCCCAGTTGATGTGGTGATATTGCCATCTGCTTTAGACAAGGAACAGCATTGCTACTGGGCTAAGAAGATTCGGCTTAGTAAGTTACCAGCCTCGGAAGGCTCAGCAGGGGTGAGAGCCGCACCTGTTGAGACTGCAATTGCATGCCCCGACCATCTAGTCCTAGCTGACCTGCCTGTGGCAAAGGGTATCGGTGCAGCCACTGCCACTTCACTTATTAAGACTTTAGGACGGAGGTCCCGCCGCCAGCTTGGCAATAGAGTTCATTTCTGTGTTCGTTGTGATTTTCCCATAGCTATCTATGGACGACTGAGCCCTTGTGAGCATGCCTTCTGCCTTGATTGTGCTAGAAGTGACCCAATGTGCTGCCTGTGTGATGAACGAATCCAGAAGATTCAAACCATCAAAATGATGGAAGGAATCTTTGTTTGCGCTGCTCCTCATTGTCTCAAGTCTTTCTTGAAGCAGACTGAATTTGAATCTCACATCCAAGAAAAGCACCCAGATCTTCTTCGGCCTAATGCAGAGAGAGAAGATGGAAATGCGTCCGAGGCGCAGAGTGTTAGGCAATCTACAGCATCAGACTCCACTGCTCAAGGTCCCCAGAGGCCCGTTTTTTCTCCTGGTTCAGAGTCACAGCCTTATGATTGGGATGACAAAGGCCGTCAACAGCCAGTGAGAGAGCAGCCCCCTTCAAGGCCAATTCAACAACCAAAGACACCACTTTTTGGCCAAGCACCTAATCCTTCTTCAGATCCTCAATCAGGCAACACTGGAGCTATTCGACAGGATTTCCATCCACAGAGCTTTGACACGAAGCAATCGGAACGCAAACCCTCCCATTTTGTTGAGAGACAGCAAGGAGTTACTTTAGTGACCCCAATTCGTGATTATCCACCCATGCATTATGTCCAGCCACCCAATGTTTCCATGCAAGTTAATCCTAATGCATTGCCGAAACCTCCTATGGCATTTAGTTACCCCCCTTACCCACAAGAGGGGGCTCATCCCTTTTATGCCACATCATATGGCATGCCTAGGCAGAACTCATCTTCTGAAATAGGTTTAGATCAGAGTTCATTACTGGGATACCCACCAGGTCCCGTAAGTGGCCCAAATTTTGCAGCAAATTATCCTCAGGCCTGGAATGCAGGAATGACTGGCGGGCCTTTTGATCAAGCTCAGGGTGGTATGATTATTGATCCAAGGGATGCTAAAGGGATGTAG 1893 0.4723 MVADSKSKSDISFAGTFASSALAACFAEICTIPLDTAKVRLQIQKQAVAGEAVTVPKYRGMLGTVGTIAREDVYPLSGRALCQDYIANVKNLYVGKDFVGDVPLTKKILASLTIGAVAITIANPTDLVKVRLQAEGKLPPGVPRRYSGSLNAYSTIVRQEGIGALWTGLGPNVARNAIINAAELASYDQVKQTILKIPGFTDNVVTHLLAGLGAGFFAVCIGSPVDVVILPSALDKEQHCYWAKKIRLSKLPASEGSAGVRAAPVETAIACPDHLVLADLPVAKGIGAATATSLIKTLGRRSRRQLGNRVHFCVRCDFPIAIYGRLSPCEHAFCLDCARSDPMCCLCDERIQKIQTIKMMEGIFVCAAPHCLKSFLKQTEFESHIQEKHPDLLRPNAEREDGNASEAQSVRQSTASDSTAQGPQRPVFSPGSESQPYDWDDKGRQQPVREQPPSRPIQQPKTPLFGQAPNPSSDPQSGNTGAIRQDFHPQSFDTKQSERKPSHFVERQQGVTLVTPIRDYPPMHYVQPPNVSMQVNPNALPKPPMAFSYPPYPQEGAHPFYATSYGMPRQNSSSEIGLDQSSLLGYPPGPVSGPNFAANYPQAWNAGMTGGPFDQAQGGMIIDPRDAKGM 630
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele42g0108 630 MobiDBLite consensus disorder prediction 386 486 - -
Lele42g0108 630 MobiDBLite consensus disorder prediction 386 405 - -
Lele42g0108 630 PANTHER E3 UBIQUITIN-PROTEIN LIGASE HAKAI-RELATED 245 619 IPR040383 GO:0016567|GO:0061630
Lele42g0108 630 Pfam Mitochondrial carrier protein 10 70 IPR018108 -
Lele42g0108 630 Pfam Mitochondrial carrier protein 101 196 IPR018108 -
Lele42g0108 630 ProSitePatterns Zinc finger C2H2 type domain signature. 366 389 IPR013087 -
Lele42g0108 630 ProSiteProfiles Solute carrier (Solcar) repeat profile. 106 193 IPR018108 -
Lele42g0108 630 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 25 - -
Lele42g0108 630 ProSiteProfiles Solute carrier (Solcar) repeat profile. 11 105 IPR018108 -
Lele42g0108 630 ProSitePatterns Zinc finger RING-type signature. 329 338 IPR017907 -
Lele42g0108 630 CDD RING-HC_HAKAI_like 311 347 IPR040380 -
Lele42g0108 630 PRINTS Mitochondrial brown fat uncoupling protein signature 46 65 IPR002030 GO:0006839|GO:0031966
Lele42g0108 630 PRINTS Mitochondrial brown fat uncoupling protein signature 18 30 IPR002030 GO:0006839|GO:0031966
Lele42g0108 630 PRINTS Mitochondrial brown fat uncoupling protein signature 156 173 IPR002030 GO:0006839|GO:0031966
Lele42g0108 630 PRINTS Mitochondrial brown fat uncoupling protein signature 199 217 IPR002030 GO:0006839|GO:0031966
Lele42g0108 630 MobiDBLite consensus disorder prediction 406 431 - -
Lele42g0108 630 ProSiteProfiles Zinc finger C2H2 type domain profile. 364 389 IPR013087 -
Lele42g0108 630 SUPERFAMILY Mitochondrial carrier 10 228 IPR023395 -
Lele42g0108 630 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 310 364 IPR013083 -
Lele42g0108 630 MobiDBLite consensus disorder prediction 460 486 - -
Lele42g0108 630 Gene3D Mitochondrial carrier domain 94 238 IPR023395 -
Lele42g0108 630 Gene3D Mitochondrial carrier domain 1 93 IPR023395 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele42g0108 Lele-ChrLele42 826359 835962 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele42g0108 8 228 Miscellaneous Gene Families AT3G54110 73.109 6.53e-112 336
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele42g0108 42 826359 835962 Lele42g0108 42 826359 835962 ECH
Lele42g0108 42 826359 835962 Lele43g1251 43 20790410 20792890 hybridization
Lele42g0108 42 826359 835962 Lele44g1243 44 20868746 20872002 hybridization