Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lele42g0097 | ATGTCATCAACTATACATATTTCCGTTGTAGATTTGGAGCAGGGAAGCCATCGCAGTGACATGAGTGCCGAGGCTAGCATTTGTTTCTCTGATGTTGAAGAGGGTTCCTCATATTCCCACTTCTATTCAACAAATGGTGGCTCATACGATGACTATAGTTTTGCTTTTGTTTCTGATCCTGAGGTTATTGAGGATGTTCCTGATTCTGCAAGAGCTTCTTCTGTCACTGAATGTTCAGTGGAAGTGGAAATTGAAAATGGGGTTCCTGAAATTAAGTTGCATTTGGATATTGTAGAGAGAGAGTGTAGGATTTGTCACATGGGTTTGGAAAGTGAAAGCCTTGAATCTGGGGTTCCAATTGAATTGGGTTGTTCCTGCAAGGATGATCTTGCTGCTGCTCATAAACTCTGTGCTGAAACTTGGTTCAAGATTAAAGGGAACAGGACCTGTGAGATCTGTCATTCTGTGGTGCGGAATGTTTTCGCGACGAATGAGGAGACGACCGAGAATTTAAGTGACAGCAGCAATGCCATCACTTTGTCCACCCTTCCGGCGCTGGCTTCCCCGGAAACTCCTCGAAGATTTTGGCAAGGCCGTGGCTTCCTGAATTTGTTGCTTATTTTTATGGTTATTGCATTTGTCATATCATGGGCTTTTCACTTCCATTTTCATTCACCTTAG | 681 | 0.4332 | MSSTIHISVVDLEQGSHRSDMSAEASICFSDVEEGSSYSHFYSTNGGSYDDYSFAFVSDPEVIEDVPDSARASSVTECSVEVEIENGVPEIKLHLDIVERECRICHMGLESESLESGVPIELGCSCKDDLAAAHKLCAETWFKIKGNRTCEICHSVVRNVFATNEETTENLSDSSNAITLSTLPALASPETPRRFWQGRGFLNLLLIFMVIAFVISWAFHFHFHSP | 226 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lele42g0097 | 226 | ProSiteProfiles | Zinc finger RING-CH-type profile. | 94 | 160 | IPR011016 | GO:0008270 | |
Lele42g0097 | 226 | PANTHER | ZINC FINGER, RING-CH-TYPE | 16 | 223 | - | - | |
Lele42g0097 | 226 | SUPERFAMILY | RING/U-box | 98 | 157 | - | - | |
Lele42g0097 | 226 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 95 | 165 | IPR013083 | - | |
Lele42g0097 | 226 | CDD | RING_CH-C4HC3_MARCH | 102 | 154 | - | - | |
Lele42g0097 | 226 | Pfam | RING-variant domain | 102 | 153 | IPR011016 | GO:0008270 | |
Lele42g0097 | 226 | SMART | ringv_2 | 101 | 154 | IPR011016 | GO:0008270 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Lele42g0097 | Lele-ChrLele42 | 755093 | 757879 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Lele42g0097 | 64 | 225 | C3H Transcription Factor Family | AT5G05830 | 54.819 | 3.97e-56 | 176 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Lele42g0097 | 42 | 755093 | 757879 | Lele42g0097 | 42 | 755093 | 757879 | ECH | |
Lele42g0097 | 42 | 755093 | 757879 | Lele43g1261 | 43 | 20849736 | 20852477 | hybridization | |
Lele42g0097 | 42 | 755093 | 757879 | Lele44g1255 | 44 | 20943184 | 20945922 | hybridization |