Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele42g0084 ATGGAGGAGGGTTTTGAACCTGACCATGTTCCTCAGCAAAGCAGGAGAGACAAGCTAAGGGTCGGTTTTCACAACCAGCACTCTTCCCTCCCGACGGCGGCGTGCACAGGTTTACTCCCGGTCACCGACCCTTCTCTTATTCCCTCCGATCTGATAACGTGCGCCAGCAATAATCCTCGATCCTCCAATTTGCAAATATACCCTGCAAATGTGCAAATTATCAACAGCAACCCTTTTGTTAACTTTCCTCTTGCTCAAACCCTTCGTTCCGAGCCATTGTCTTTATCTCTCTCCCCCTCCCACAATCACTACAGTAATCCCCCACTGGAGCTGAATCTCCCGAGATATGATGGCAGCTCCGTGAACATCCCGGCCAACGACGCCGTTTTGAGAAGCTCCGTCGTTCCGCTGGGGCCGTTTACGGGGTATGCTTCGGTGTTGAAGGGATCGAGGTTTCTGAAGCCAGCTCAGCAGTTATTGGAGGAGCTTTGCGACGTTGGGGGTCGTGAAATTTGCGCCGCAGAAAAGATGACGGCGGATGCTTCGTTGATGGAACCCCCTCCGTCGTTGGAGAGCCTCGATTCCGGCTATCCGCCGCCGACGACACTTGGAGATGGCGGAGGGGAGGGTGGGAAGAAAAAGTCGAGACTGTTAATGATGCTTGATGAGGTGTACAGAAGGTACAGGCAGTACTATCAACAGATACAAGCAGTAGTAACTTCATTTGAGTATGTTTCAGGCCTTGGTAACGCTGCTTCTTATGGGATCTTGGCTATAAATGCCATGACCAAGCATTTCAAATGCTTGAAGACTGTGATCATGGGCCAGCTTCACTTCACCTCTAATAAGGCTCATTTTCACAACCTGAGCAACAAAAGGGACGAATCTCCAAGGTTTATTGGAAATGTCGACCATAGAGGAGGAGTAGGACCTTACAGCCAAATTAGGGATTCTCAGAACCCCGAATTATTAGGGAACCAACCAATCTGGCGACCTCAACGTGGACTCCCCGAGTGTGCTGTAACCGTTCTTAGGGCATGGTTGTTCGAGCACTTTCTACATCCATATCCTACTGATACGGACAAGCTGATGCTGGCGAGACAGACCGGTCTGTCTCGTAGCCAGGTTTCAAACTGGTTCATTAATGCAAGAGTAAGGTTGTGGAAACCAATGGTTGAAGAAATACACATGTTAGAAACACGACAGTCTCAAAAGAATCATCAGAACACAGGTCAAGATCACAGCAACAAGAACAAGCCCAGCACAAGTGACAAGTTTCAAGATGATGCTCCTTTTAAACGCACCAGAAATTATGAACCTACGAGTCGTGATATGTCTGCTACAGTGAGGAATCATCAGCTGCCTTGTAATGCAATAAGCAATGTTAATAACAATAATTATCAGGCAGTGAGTGTTGGAGCAGTGGCCAATAGCGTGTCTCTCACACTGGGTCTCCACCAGAACAACGGTGGGCTTGCTCTATCTGAACCTTTTCCCATGAGTGAAGCTCTCAGTTTTGGGCTTGCCCTAGAAGTACCGAGTAACGAAGAGTATGTAATGAGTGGCTCTGAGTCGCAGAATCGGCATTATGGAAGAGAGCAGGTGATTGGAGGGCAACTTGTGCATGACTTTGTTGGCTAA 1641 0.4845 MEEGFEPDHVPQQSRRDKLRVGFHNQHSSLPTAACTGLLPVTDPSLIPSDLITCASNNPRSSNLQIYPANVQIINSNPFVNFPLAQTLRSEPLSLSLSPSHNHYSNPPLELNLPRYDGSSVNIPANDAVLRSSVVPLGPFTGYASVLKGSRFLKPAQQLLEELCDVGGREICAAEKMTADASLMEPPPSLESLDSGYPPPTTLGDGGGEGGKKKSRLLMMLDEVYRRYRQYYQQIQAVVTSFEYVSGLGNAASYGILAINAMTKHFKCLKTVIMGQLHFTSNKAHFHNLSNKRDESPRFIGNVDHRGGVGPYSQIRDSQNPELLGNQPIWRPQRGLPECAVTVLRAWLFEHFLHPYPTDTDKLMLARQTGLSRSQVSNWFINARVRLWKPMVEEIHMLETRQSQKNHQNTGQDHSNKNKPSTSDKFQDDAPFKRTRNYEPTSRDMSATVRNHQLPCNAISNVNNNNYQAVSVGAVANSVSLTLGLHQNNGGLALSEPFPMSEALSFGLALEVPSNEEYVMSGSESQNRHYGREQVIGGQLVHDFVG 546
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele42g0084 546 Pfam Associated with HOX 146 273 IPR006563 -
Lele42g0084 546 SMART HOX_1 330 394 IPR001356 GO:0003677
Lele42g0084 546 MobiDBLite consensus disorder prediction 402 445 - -
Lele42g0084 546 SUPERFAMILY Homeodomain-like 332 397 IPR009057 -
Lele42g0084 546 Gene3D - 333 395 - -
Lele42g0084 546 SMART prehox3 141 275 IPR006563 -
Lele42g0084 546 CDD homeodomain 330 391 IPR001356 GO:0003677
Lele42g0084 546 ProSiteProfiles 'Homeobox' domain profile. 349 390 IPR001356 GO:0003677
Lele42g0084 546 MobiDBLite consensus disorder prediction 402 417 - -
Lele42g0084 546 FunFam BEL1-like homeodomain protein 9 333 395 - -
Lele42g0084 546 Pfam Homeobox KN domain 347 386 IPR008422 GO:0003677|GO:0006355
Lele42g0084 546 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 69 414 - -
Lele42g0084 546 MobiDBLite consensus disorder prediction 183 212 - -
Lele42g0084 546 MobiDBLite consensus disorder prediction 418 440 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele42g0084 Lele-ChrLele42 628252 631928 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele42g0084 1 546 Homeobox Transcription Factor Family AT5G02030 41.290 1.47e-99 311
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Lele42g0084 POX 3.9e-33 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele42g0084 42 628252 631928 Lele42g0084 42 628252 631928 ECH
Lele42g0084 42 628252 631928 Lele43g1275 43 20977654 20981848 hybridization
Lele42g0084 42 628252 631928 Lele44g1271 44 21067632 21072168 hybridization