LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lele42g0080	ATGGCTCAGTCGTCGGGTCGCCGCGGTTTGGTGGGAGACTACATCGTCGGGAAGCAAATTGGGTCCGGGTCTTTCTCGGTGGTGTGGCATGGGAGGCACCGAGTCCATGGAACTGAGGTTGCCATTAAAGAGATCGCCACCGGTCGGCTTAACAAGAAGTTGCAGGAGAGTCTCATGTCTGAGATTTTTATCTTGAAGAAGATTAACCATCCTAATATAATTCGTTTGCACGATATAATTGAGGTTCCTGGGAAGATACATCTTGTGTTAGAGTACTGTAAAGGGGGCGATCTCTCTATGTATATACAGCGCCATGGAAGAGTCCAAGAGGGAACTGCAAAGCATTTTATGCAACAGTTAGCTGCTGGCCTACAAGTTCTTCGAGATAATGATCTTATTCATAGAGATTTGAAACCACAGAATCTTCTTCTCACCAGAAATGATGACAAGTCAGTTCTGAAGATTGCTGATTTTGGATTTGCAAGATCTCTGCAACCTAGGGGTCTTGCAGAAACCTTGTGTGGTTCACCTCTCTACATGGCTCCAGAAATTATGCAACTACAGAAGTATGACGCTAAGGCAGACCTCTGGAGTGTGGGTGCGATCTTATTTCAGCTTGTTACAGGAAGAACACCATTTACTGGGAATAATCAAATACAGTTACTACAGAACATTGTGAAATCAACTGAACTGCAGTTCCCATCTGATAATCAAAGTTTGAGTTCTGAGTATAAAGATTTATGTGTGAAATTGCTGCGACGTAGTCCAGTGGAACGGCTAACTTTTGAAGAATTTTTTAATCATCCATTTCTTTTTCAGAAGCAACCAGAACAGGATAAATCATTGAGACATGGAAGTGCTTCGAGGATGTTAGGTGAAATTCACTTAACAGAGCCCAATCCTTTGAGAAGGGCCAAGGAAAATCATCAAGAGGATTGCTTACCTTTCTTTTTGGATGATGATTCTTGTGGTCCTGGGGAAAGCCCATCTTTTTCGAGGAAGAAATCCTCAATAAAGTCTACCTATGGATTTGACCTTAATACCCAGCAAGATAGAGCAGGCTCAGCATTTGCTACTTCTAATAACATAAATTTTACTTCCCGACAGCAACCTGAAAACAGTGCTATAAGGTTGGACAGCCATAGAACCTCAGCAAGAAATCTAGCTGATCCTCTAGAATCTATAGAACAGAGATTAGCAAACACTGGTTCAAGAGTTGCAGACTCGCTAGAGAATATTGATCAAGATTATGTTCTTGTGTCTGGACCTCCTATGGATGTATCATCATCTTCAGTGAGTGCATCAAAACCAAGCCATTTTCCATATAGATCAGGTGCTTCCCTACAGGAGTCTTCTAATGTAATTGATAGAGCAACTTCTCCAATGCCAATAATTGGAAGTTCAGAAAGTCAGGACTCTGCTCCAGGGACTTCACATGCGTCAATGGATACTGGAGATGAACAGCCATCAGCTGACTGCATGACCAGGATAAAATCATTGCAACGATGTGCATCCACCATAACTGAATTGGTTCACGAAAAGATGGAGGCTGGAAAGCAGCTGGAAGCATTCTCCATTCAGCTTGTTATTCTTGCAATTTGGAAGCAAGCACTACACATATGCCATGCACAGGCTGCCTCTGCCATGGAAGGGAGTCCAAGTCAAGAAACCACTAGATGTAGGAGGAGCGCCAACATGAAGCATGTCAGTTCTGATTCGGAAGAATGCCTTGATGGAAATGTGCAAGGGCCAAAGGATATTCTATCTCAAATTGAAAGTGAATTTCTAAGAGAATTTGAGCGTGCTGAAGAACTTGCTAAGGCTGTTGAGCCTGGAAATACAGAGATGCCAGATGCAATGGAGACGATATTTCAGTCTGCCCTTGCTTTTGGGAGACATGGGGGTGTAGAAGAGCTCATGGGCGAAATGGATAGTGCAGCTGCATTGTACTCAAAAGCTGTGCTACTATTGGTGTTCCTTTTAGTGGAAGCTCCATCCCTCATTCTAAACCCTCCTTTTTCCCTGACTAACACGGATCGCTACAGGCTTCGGACTTACATTGATATTCTAAACAACAGGCAAGGACATTCGAGGTCTCAGCGAATGACGCTGCTGAAATGTGACGAGACCCAAGGCGGCCTTAAGAACAAGTTTTAG	2157	0.4339	MAQSSGRRGLVGDYIVGKQIGSGSFSVVWHGRHRVHGTEVAIKEIATGRLNKKLQESLMSEIFILKKINHPNIIRLHDIIEVPGKIHLVLEYCKGGDLSMYIQRHGRVQEGTAKHFMQQLAAGLQVLRDNDLIHRDLKPQNLLLTRNDDKSVLKIADFGFARSLQPRGLAETLCGSPLYMAPEIMQLQKYDAKADLWSVGAILFQLVTGRTPFTGNNQIQLLQNIVKSTELQFPSDNQSLSSEYKDLCVKLLRRSPVERLTFEEFFNHPFLFQKQPEQDKSLRHGSASRMLGEIHLTEPNPLRRAKENHQEDCLPFFLDDDSCGPGESPSFSRKKSSIKSTYGFDLNTQQDRAGSAFATSNNINFTSRQQPENSAIRLDSHRTSARNLADPLESIEQRLANTGSRVADSLENIDQDYVLVSGPPMDVSSSSVSASKPSHFPYRSGASLQESSNVIDRATSPMPIIGSSESQDSAPGTSHASMDTGDEQPSADCMTRIKSLQRCASTITELVHEKMEAGKQLEAFSIQLVILAIWKQALHICHAQAASAMEGSPSQETTRCRRSANMKHVSSDSEECLDGNVQGPKDILSQIESEFLREFERAEELAKAVEPGNTEMPDAMETIFQSALAFGRHGGVEELMGEMDSAAALYSKAVLLLVFLLVEAPSLILNPPFSLTNTDRYRLRTYIDILNNRQGHSRSQRMTLLKCDETQGGLKNKF	718

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lele42g0080	718	FunFam	Serine/threonine-protein kinase ATG1	6	312	-	-
	Lele42g0080	718	CDD	STKc_ATG1_ULK_like	20	270	-	-
	Lele42g0080	718	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	132	144	IPR008271	GO:0004672\|GO:0006468
	Lele42g0080	718	SUPERFAMILY	Protein kinase-like (PK-like)	11	272	IPR011009	-
	Lele42g0080	718	Gene3D	Transferase(Phosphotransferase) domain 1	6	314	-	-
	Lele42g0080	718	FunFam	Non-specific serine/threonine protein kinase	1	94	-	-
	Lele42g0080	718	PANTHER	SERINE/THREONINE-PROTEIN KINASE UNC-51-RELATED	3	627	IPR045269	GO:0004674\|GO:0006914
	Lele42g0080	718	SMART	serkin_6	14	271	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Lele42g0080	718	ProSiteProfiles	Protein kinase domain profile.	14	271	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Lele42g0080	718	Pfam	Protein kinase domain	15	271	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Lele42g0080	718	ProSitePatterns	Protein kinases ATP-binding region signature.	20	43	IPR017441	GO:0005524
	Lele42g0080	718	MobiDBLite	consensus disorder prediction	461	485	-	-
	Lele42g0080	718	MobiDBLite	consensus disorder prediction	461	490	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lele42g0080	Lele-ChrLele42	577178	584081	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lele42g0080	10	280	CBL-interacting serine-threonine protein kinases	AT2G30360	36.823	2.13e-54	191

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	Group-Pl-3	Lele42g0080		Pkinase	2.8e-71	CL0016