Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele42g0067 ATGGAAGAAGGTCAATGTTGGATTTGGAGAAAGAGAAAGCACTCATCTTTGAGCTCTTATAATAATAGTCTTGCTTCACCGACACACAAGTTCAGCTATGGCGATTCATGGGAAGAACAAGCTTTTGCAGAAGATGAGCGTCTTGGTGGCTGTATCTGGCCCCCAAGATCATACTCTTGCAGCTTTTGCAGCAGAGAGTTCAGGTCCGCTCAAGCTCTTGGTGGCCACATGAATGTTCACAGAAGAGATAGAGCTCGGCTAAAGCAACCCCCAAGTCCACACAATAAACAAGATGATCAAACCAGTAGTCTTCTTGATCATCAAAATTCCTTCACATCTTCTTCTCTTGCTTATTCCAACGCTAACCCTAATAATTCTGAAATTCTTGCTTCTGAGGAGGTTAAATTAGCGCCTCTATCATCTTTGATTCAAGAGAATTCCCCTCCATACGATTCTTGTATTTCATGGTCAAACTTTGCTCAAGAAAGATTATATTCTCGAAAGGTCGATCTTATTACTGATCGTAATAAGGAAGAAGAAGCTGATATTGTGAGCTACAAGAGGAGAAGAATTATAACAGATAATTCATCATCAATTCGATTGATCTCCTCAAAATCAATTCCAGCTGATCATATCAAGTCTCAGATGTTCGAGTTTCTCAGTCCTAGTTCCATTGAAGAGCTAGATCTGGAGCTAAGGCTTGGTCACAGTCCTCCCAAGGTATAG 726 0.4091 MEEGQCWIWRKRKHSSLSSYNNSLASPTHKFSYGDSWEEQAFAEDERLGGCIWPPRSYSCSFCSREFRSAQALGGHMNVHRRDRARLKQPPSPHNKQDDQTSSLLDHQNSFTSSSLAYSNANPNNSEILASEEVKLAPLSSLIQENSPPYDSCISWSNFAQERLYSRKVDLITDRNKEEEADIVSYKRRRIITDNSSSIRLISSKSIPADHIKSQMFEFLSPSSIEELDLELRLGHSPPKV 241
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele42g0067 241 Gene3D Classic Zinc Finger 55 116 - -
Lele42g0067 241 SUPERFAMILY beta-beta-alpha zinc fingers 55 84 IPR036236 -
Lele42g0067 241 MobiDBLite consensus disorder prediction 77 93 - -
Lele42g0067 241 PANTHER OS07G0101800 PROTEIN 33 238 - -
Lele42g0067 241 Pfam C2H2-type zinc finger 58 82 - -
Lele42g0067 241 ProSitePatterns Zinc finger C2H2 type domain signature. 60 80 IPR013087 -
Lele42g0067 241 SMART c2h2final6 58 80 IPR013087 -
Lele42g0067 241 ProSiteProfiles Zinc finger C2H2 type domain profile. 58 85 IPR013087 -
Lele42g0067 241 MobiDBLite consensus disorder prediction 74 106 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele42g0067 Lele-ChrLele42 482807 483532 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele42g0067 1 241 C2H2 Transcription Factor Family AT5G06070 33.074 2.03e-28 105
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lele42g0067 zf-C2H2_6 9.4e-07 CL0361
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele42g0067 42 482807 483532 Lele42g0067 42 482807 483532 ECH
Lele42g0067 42 482807 483532 Lele43g1294 43 21131709 21137594 hybridization
Lele42g0067 42 482807 483532 Lele44g1286 44 21200000 21201642 hybridization