Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele42g0066 ATGGAATTTAATCGTCAAAGCGCAAAGAAGTTATCAGAGCAGGTAAGATGGAGCCCGGAAGAATCTGGAGCGAGATCTTATATTTGTGCGTTTTGCAAGAAAGGATTCTCAAATGCTCAAGCCCTAGGTGGTCACATGAACATCCATAGAAGAGAACGAGCAAAGCTCCAACAATCATCTGAAGAAGAAAACTTGCTTTCTCTGGACATCTCCATCAAGAACCCTAGTACTTGTACTTCTGATGATGATGATGATCAGCCTCCTCCTAATTATAAGCCTTCTAATTCAGAAGAGAAGGTTTTGTTTCAGTGGGATTCTGAAAAACTTCCTAGTAATAATTCCTTTTTTGCTGGGAATAATGAGGAGAACATTGAAATTGATCTTGAGCTTCGGTTAGGTCATCAATCGCACGAGGCCTCCTCAACTTTGAGCAACAGAGAGTTTTTTTGA 450 0.4044 MEFNRQSAKKLSEQVRWSPEESGARSYICAFCKKGFSNAQALGGHMNIHRRERAKLQQSSEEENLLSLDISIKNPSTCTSDDDDDQPPPNYKPSNSEEKVLFQWDSEKLPSNNSFFAGNNEENIEIDLELRLGHQSHEASSTLSNREFF 149
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele42g0066 149 ProSiteProfiles Zinc finger C2H2 type domain profile. 27 54 IPR013087 -
Lele42g0066 149 ProSitePatterns Zinc finger C2H2 type domain signature. 29 49 IPR013087 -
Lele42g0066 149 Pfam C2H2-type zinc finger 27 51 - -
Lele42g0066 149 PANTHER OS07G0101800 PROTEIN 14 135 - -
Lele42g0066 149 SUPERFAMILY beta-beta-alpha zinc fingers 23 54 IPR036236 -
Lele42g0066 149 MobiDBLite consensus disorder prediction 67 97 - -
Lele42g0066 149 Gene3D Classic Zinc Finger 4 85 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele42g0066 Lele-ChrLele42 477252 477794 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele42g0066 24 133 C2H2 Transcription Factor Family AT3G09290 38.519 4.22e-20 80.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lele42g0066 zf-C2H2_6 1.8e-05 CL0361