Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lele42g0059 | ATGGCTTCAGTGGGATCCTCCTATTGGTGCTACAGATGCAATCAGTTTGTTAGGGTTCGAATTGGGGCTGAAGAAACCTTGCTTTGCCCTGATTGTGGGTCTGATTTTATAGAAGAAATCAGGACTCGTACTCACTCTCCTTTCCATCGATTCCCTTCACCATCAATGTATGTCGACGATGAATCTAGCTCCGAGCAAGGAGCCAGCCCAAGAATCCGCCGTGGCTCGAGGAACGCCAGCGATCGATCCCCTTTTAACCCTGTTATCGTCCTCAGTGGGCCCGCCGATGGCGGTGGAAATGAAGGGGTTGGTATTGAAAGAGGGAACTTTGAGCTTTATTACAATGAAGGTACAGGTTCGGGTCTTCGGCCGCTTCCTGCAAGTGTCACAGAGTTCTTAATGGGTGCTGGATTTGACCACCTTCTTGACCAGTTGACTCATTTAGAAGTCACGGGAATCGGACGATTAAATCAAACTCCGGCATCAAAATCTGCAATCGAATCGATGCCCATCGTCAAGATTGTTGCTACACATGTTTCGGCGGAATCGCATTGCGCAGTTTGTAAGGAGCCCTTCGAGCTTGACTCAGATGCTCGTGAAATGCCTTGTAAGCACATTTACCATTCTGATTGTATCCTTCCATGGCTATCAATTCGTAATTCCTGTCCAGTTTGTCGCCATGAGTTACCTACTGAGATGCGTGGGAGTAGTAGTGGCAGAAACTCCCCTGTGTCCGACGGTGGAAGGGATGATCATACTGTGGGATTAACTATATGGAGACTGCCTGGTGGTGGTTTTGCTGTTGGAAGGTTCACTGGTGGAAGAAGAGCTGCCGAACGTGAACTTCCTGTTGTATATACAGAAATGGATGGTGGATTCAATAGTGTGGGGGTTCCACGGAGGATATCTTGGGAAACGAGTGTGAGGAGATCAAGGGAGTCTTGGGGATTAGGTAGTGCTTTCCGGAACTTCTTCTCACACTTCGGGTGGCTTAGGACTTCCTTCTCTCGTTCTTCCAGAACTGATTCAAATGTGAGCCGAAGAGCTCGATCTAATACAATATTATCTAGATTCTCAAGAAGGCGCAACTAG | 1092 | 0.4789 | MASVGSSYWCYRCNQFVRVRIGAEETLLCPDCGSDFIEEIRTRTHSPFHRFPSPSMYVDDESSSEQGASPRIRRGSRNASDRSPFNPVIVLSGPADGGGNEGVGIERGNFELYYNEGTGSGLRPLPASVTEFLMGAGFDHLLDQLTHLEVTGIGRLNQTPASKSAIESMPIVKIVATHVSAESHCAVCKEPFELDSDAREMPCKHIYHSDCILPWLSIRNSCPVCRHELPTEMRGSSSGRNSPVSDGGRDDHTVGLTIWRLPGGGFAVGRFTGGRRAAERELPVVYTEMDGGFNSVGVPRRISWETSVRRSRESWGLGSAFRNFFSHFGWLRTSFSRSSRTDSNVSRRARSNTILSRFSRRRN | 363 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lele42g0059 | 363 | CDD | RING-H2_RNF181 | 185 | 229 | - | - | |
| Lele42g0059 | 363 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 29 | 49 | IPR013087 | - | |
| Lele42g0059 | 363 | FunFam | E3 ubiquitin-protein ligase RING1-like | 147 | 232 | - | - | |
| Lele42g0059 | 363 | Pfam | zinc-ribbon | 7 | 40 | IPR039525 | GO:0061630 | |
| Lele42g0059 | 363 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 151 | 232 | IPR013083 | - | |
| Lele42g0059 | 363 | Pfam | Protein of unknown function (DUF1117) | 254 | 358 | IPR010543 | - | |
| Lele42g0059 | 363 | Pfam | Ring finger domain | 184 | 226 | IPR001841 | - | |
| Lele42g0059 | 363 | SUPERFAMILY | RING/U-box | 165 | 232 | - | - | |
| Lele42g0059 | 363 | MobiDBLite | consensus disorder prediction | 57 | 85 | - | - | |
| Lele42g0059 | 363 | MobiDBLite | consensus disorder prediction | 229 | 249 | - | - | |
| Lele42g0059 | 363 | PANTHER | E3 UBIQUITIN-PROTEIN LIGASE PRAJA | 77 | 230 | - | - | |
| Lele42g0059 | 363 | SMART | ring_2 | 185 | 225 | IPR001841 | - | |
| Lele42g0059 | 363 | ProSiteProfiles | Zinc finger RING-type profile. | 185 | 226 | IPR001841 | - | |
| Lele42g0059 | 363 | MobiDBLite | consensus disorder prediction | 51 | 87 | - | - | |
| Lele42g0059 | 363 | SUPERFAMILY | RNA polymerase subunits | 7 | 46 | IPR029040 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Lele42g0059 | Lele-ChrLele42 | 445190 | 446281 | Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Lele42g0059 | 124 | 240 | C3H Transcription Factor Family | AT5G01980 | 43.590 | 1.31e-26 | 108 |