Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele42g0048 ATGGTGTTGCAGAAGAATTTGAACTACAATTTTAATGGCTATCAAGTGCCTGTCATCCCTAGAGCTTCGAGAACAACTAGGGGGAGGGGTACTGTCAAGAAGAAGAGTGAGGGCAATCAGATACAAGCTTTTGAAATTTTGGCTAGTGTAGCAGGCGACTTTCTGCAGAAGAATGAAAACTCCAATTCTGACAATGCCGTGGTCAGAAAGGATCCTGTCAGTTTTGTTGGAATTAACCTAAAGGATAAACAAGAGGAAGAAGGAGGGTCTTTTAAGAGTGACCTCTTTGAGCATGGATGTTGCAGTGAGAATGCCTCGGGCTCGGTCTCTAGTTTGCAAGGGAAGCATAATGACCAAAGGGTTGAACGCTGTTCATCTTTTCTTAGCAATCATCTTGAAGGCCAAGGGCAAAATGTTTTTGAGAAGGAAGCAGATGGACTGGGACTGATAAAAGAGCATTGTGTGAATGAGAAAATTGTTCATATTACTGGCAGCTCTGCTGGAGTGACAGAACCTGACGACAGGGCCTCTAAAAGGGAAAGTTCAGAAAATTCTGTCGAGAAGCCTTCATTGGAGGGTCTCGTACATGGTTCTGGTGGTAGGAAATTATTTAATAGAGATGATGACGAAAACTTTGTTAGGTGTACTCAACCAAGCTCCAAGAATAAGAATTCTGGCCCCCTGCCAGATATGCATTTTCAAAGAGCGAACAGTGTTTCTGGTTCCAAAAATCGTGATGTAGGCCAAAAGTCAAAGAGTAGGAGTTTGTCTGGAAGTGATGACATCATTGATAGAGATAATTATATTCTTGAAAGCTCACAGAGGATTTATCCTTTTAAGAAGAGGAAGTTCTTCAACCAGACCTCATCGTCTACGTCCGATCAGGGGTCTCATTGTCATGGCATATCCGATTCTTCTGACACCAGAGTTGATGATGTGAACTGCAGTGCAGCAATTGGAGCATCATCCTCTATAGCGGGAGGTCAACAAGTTCATACTGGGTCAAGGGATTGTAATGTGAAGCTTAGCATAAAATCTTTTAAAGTCCCAGAGCTTTTTATTGATATCCCTGAAACTTCAACTATTGGTTCATTAAAGAGGACAGTTATGGAGGCAGTGACGGCTATTTTAGGAGATGAACTGCATGTAGGTATTCTTCTTCAGGGAAAGAAGGTCCAAGATGACAGCAAAACCCTAATTCAGACTGGGATTTCTCAAGATGATAAACACCATAGATTGGGGTTCATGTTGGAGCCAAGACATACTAAAATTACACCACCATATAATGAAGACCCTTATTTTCGAACCACTAGTTCTCATCGGGATATATCCAGGAAACCTACATCTCTGATGCTACAACAAAGAACTTGTAATGTCTCCCAAGAGCATTCCCTGATTAAATTTGAAAGTTGTGGTGAAGGTGACCTAAACGTGGTCCCCTCTGTAGCGTATACTTCCCCTAACAATACTATGTCAAAGTGCCGTGCTCTAGTTGCAGTTCCGGCTATTAACATGGAGGCACTAGCTGTCATTCCCTTCCGTCATAAGCCTGGAAATCCTGACTTTGTTCAGCGTCGAATCAGGAGGCCTTTCTCTGTGTCTGAAGTAGAAGCACTGGTTCAGGCAGTTGAAAAACTGGGAACTGGAAGATGGCGTGATGTCAAACAGTGCGCCTTTGACAATGCCAAGCACAGGACTTACGTGGACTTGAAGGATAAGTGGAAGACATTAGTGCACACTGCAAGAATCTCCCCTCAGCAAAGGAGAGGAGAACCTGTTCCTCAGGAGCTCTTGGACAGAGTCTTAGCTGCGCATGCCTATTGGTCTCAACAGCAATGTAAGCATCAAGTTAAGCCTCTTTGA 1863 0.4326 MVLQKNLNYNFNGYQVPVIPRASRTTRGRGTVKKKSEGNQIQAFEILASVAGDFLQKNENSNSDNAVVRKDPVSFVGINLKDKQEEEGGSFKSDLFEHGCCSENASGSVSSLQGKHNDQRVERCSSFLSNHLEGQGQNVFEKEADGLGLIKEHCVNEKIVHITGSSAGVTEPDDRASKRESSENSVEKPSLEGLVHGSGGRKLFNRDDDENFVRCTQPSSKNKNSGPLPDMHFQRANSVSGSKNRDVGQKSKSRSLSGSDDIIDRDNYILESSQRIYPFKKRKFFNQTSSSTSDQGSHCHGISDSSDTRVDDVNCSAAIGASSSIAGGQQVHTGSRDCNVKLSIKSFKVPELFIDIPETSTIGSLKRTVMEAVTAILGDELHVGILLQGKKVQDDSKTLIQTGISQDDKHHRLGFMLEPRHTKITPPYNEDPYFRTTSSHRDISRKPTSLMLQQRTCNVSQEHSLIKFESCGEGDLNVVPSVAYTSPNNTMSKCRALVAVPAINMEALAVIPFRHKPGNPDFVQRRIRRPFSVSEVEALVQAVEKLGTGRWRDVKQCAFDNAKHRTYVDLKDKWKTLVHTARISPQQRRGEPVPQELLDRVLAAHAYWSQQQCKHQVKPL 620
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele42g0048 620 PANTHER TELOMERIC REPEAT BINDING PROTEIN 1 617 IPR031105 -
Lele42g0048 620 ProSiteProfiles Myb-like domain profile. 523 578 IPR001005 -
Lele42g0048 620 MobiDBLite consensus disorder prediction 165 260 - -
Lele42g0048 620 SMART sant 527 580 IPR001005 -
Lele42g0048 620 MobiDBLite consensus disorder prediction 172 186 - -
Lele42g0048 620 MobiDBLite consensus disorder prediction 287 306 - -
Lele42g0048 620 SUPERFAMILY Ubiquitin-like 335 419 IPR029071 -
Lele42g0048 620 CDD SANT_TRF 529 579 - -
Lele42g0048 620 MobiDBLite consensus disorder prediction 235 256 - -
Lele42g0048 620 SUPERFAMILY Homeodomain-like 529 610 IPR009057 -
Lele42g0048 620 Pfam Myb-like DNA-binding domain 528 577 IPR001005 -
Lele42g0048 620 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 524 582 IPR017930 -
Lele42g0048 620 ProSiteProfiles Ubiquitin domain profile. 340 408 IPR000626 GO:0005515
Lele42g0048 620 Gene3D - 519 619 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele42g0048 Lele-ChrLele42 375503 378796 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Lele42g0048 None None None
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele42g0048 42 375503 378796 Lele25g1252 25 8364994 8368405 ECH
Lele42g0048 42 375503 378796 Lele26g1264 26 8317193 8320701 ECH
Lele42g0048 42 375503 378796 Lele27g0831 27 16347726 16351111 ECH
Lele42g0048 42 375503 378796 Lele28g1256 28 8351355 8354864 ECH
Lele42g0048 42 375503 378796 Lele42g0048 42 375503 378796 ECH
Lele42g0048 42 375503 378796 Lele43g1311 43 21239927 21244822 hybridization
Lele42g0048 42 375503 378796 Lele44g1303 44 21293703 21300749 hybridization