Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele42g0040 ATGAAGGAGAGGCAACGTTGGAGAGCTGAGGAGGACGCATTATTACGTGCTTATGTCAAACAGTATGGTCCTAGGGAATGGAATCTTGTGTCCCAGCGCATGAACACACCCCTTAACAGGGACGCCAAATCTTGCTTAGAAAGGTGGAAGAACTACCTCAAGCCTGGCATCAAGAAAGGATCTCTCACTGAAGAAGAGCAACGGCTTGTCATCCGACTTCAGGCAAAACACGGCAACAAATGGAAGAAAATTGCTGCGGAAGTCCCGGGTCGCACTGCTAAGAGGTTAGGTAAGTGGTGGGAAGTATTTAAAGAGAAGCAGCAGAGGGAAAAAAAGATCAATAAAACAGTTGACCCAATTGACGACACTAAGTACGATCATATACTTGAGACTTTTGCTGAGAAGCTTGTGAAAGAACGCCCTTCACCATCCTACCTTATGGCTGCTTCCAATGGAGCTTTTATTCACACGGATGCATCAGCTCCTACGTCAGCTATGCTTCCTCCATGGCTTTCAAACTCAAATAACTCTACAACTATTCGGCCACCTTCCCCTTCTGTGACGCTAAGTCTCTCTTCGTCAACTGTAGCTGCACCGCCTCCTTTTCAATGGTTACAACCTGAGAGAGCGGCAGAGAATGCTTCTCTCGTTATAGGGAATGTAACACCTCACGGAACTAATCCAGCTTTTGGTGATAACATGGTAGTATCTGAGCTAATTGAGTGCTGTAAAGATTTGGAAGAAGGGCATAGGGCACTGTCATCCCACAGGAAGGAAGCAGCATGGAGGCTAAGGCGGGTGGAGTTGCAGTTGGAGTCAGAGAAGGCTTGTCGGAGGCGGGAGAAGATGGAAGAGATTGAAGTGAAGATTAAAGCTCTCCGGGAAGAAGAGAAAGCTGCGTTGGATAGAATTGAGGCTGAATACCGGGAGCAGCTAGCTGGACTGAGAAGAGATGCAGAAACCAAGGAGCAGAAGTTGGCTGAGCAATGGGCTGCAAAGCACTCAAAGCTTAATAAGTTTCTAGAGCAGATGGGGGGCAGAAGCAGGCTTGCTGAGCCAAATGGAAGATGA 1071 0.4762 MKERQRWRAEEDALLRAYVKQYGPREWNLVSQRMNTPLNRDAKSCLERWKNYLKPGIKKGSLTEEEQRLVIRLQAKHGNKWKKIAAEVPGRTAKRLGKWWEVFKEKQQREKKINKTVDPIDDTKYDHILETFAEKLVKERPSPSYLMAASNGAFIHTDASAPTSAMLPPWLSNSNNSTTIRPPSPSVTLSLSSSTVAAPPPFQWLQPERAAENASLVIGNVTPHGTNPAFGDNMVVSELIECCKDLEEGHRALSSHRKEAAWRLRRVELQLESEKACRRREKMEEIEVKIKALREEEKAALDRIEAEYREQLAGLRRDAETKEQKLAEQWAAKHSKLNKFLEQMGGRSRLAEPNGR 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele42g0040 356 FunFam MYB-related transcription factor 4 58 - -
Lele42g0040 356 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 54 108 IPR017930 -
Lele42g0040 356 Coils Coil 283 325 - -
Lele42g0040 356 PANTHER PROTEIN ROUGH SHEATH 2 HOMOLOG 1 351 - -
Lele42g0040 356 CDD SANT 6 53 IPR001005 -
Lele42g0040 356 Pfam Myb-like DNA-binding domain 7 68 - -
Lele42g0040 356 CDD SANT 63 104 IPR001005 -
Lele42g0040 356 Gene3D - 62 122 - -
Lele42g0040 356 SMART sant 3 55 IPR001005 -
Lele42g0040 356 SMART sant 58 106 IPR001005 -
Lele42g0040 356 ProSiteProfiles Myb-like domain profile. 1 53 IPR001005 -
Lele42g0040 356 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 53 IPR017930 -
Lele42g0040 356 ProSiteProfiles Myb-like domain profile. 54 104 IPR001005 -
Lele42g0040 356 SUPERFAMILY Homeodomain-like 4 98 IPR009057 -
Lele42g0040 356 Gene3D - 4 58 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele42g0040 Lele-ChrLele42 294311 295381 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele42g0040 1 353 MYB Transcription Factor Family AT2G37630 66.486 2.82e-164 462
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lele42g0040 Myb_DNA-bind_6 2.4e-14 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele42g0040 42 294311 295381 Lele42g0040 42 294311 295381 ECH
Lele42g0040 42 294311 295381 Lele43g1320 43 21300204 21301277 hybridization
Lele42g0040 42 294311 295381 Lele44g1312 44 21359371 21360444 hybridization