Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele42g0039 ATGTCTCCAAGGCGGGAGCTTTCCAAGCCAGTAAATCCCTTCCACCTTCTTTCATTTTCGAGATCTCTTGAAGATTTTGATTATCCAAAAGAAGAAGAAAGAAATAGAGAGAGTAAAGATATTGAGAGTGGGGAGAGAAGGAGAAAGGTGTCGTTGTGGGGTGGGGTGGGGTGGGGCGGGTTCAGTATCACTGGCGGTGTTGGTGATTTCTCGTTGGAATTGAATCTTCTTGCGCCTAGTGAGGAAGCAAACCTGGGGAGTGAAAGCTCTGGGTTTGGTCGCTGGTTCTGTTGCGTGGATTGGCTCTTGCGATTCTGGCGCCCCGTCATGGTGGATAACATGGAAATCGACTCACCTTCGGAGTCCCAACCTCTCAAGCCTCGAGATCGAATCATTCGGAGGCTTCTTCAATTTGGAGTTCCCGAGGATCAACTTGATCAGCCTCCCCTCGTTGATTTTATCAAGGATAAAAAGTCGTTGATACCTGAACTAGTATCTGTTATATTACCTACGGATGAGGAAGTGGCTGAAGCACTGCAAGATTCTAAATTTGGTTCTAAAAAGTCCTCATTGGGTGTAACCATGAAGAAAAGGTTCCATGAAAGCATGGCTTGGTTACAGTGGTTGATGTTTGAGGGTGACCCCGCCGCAGCCCTGAGGAACCTTTCCAAACTGTCCATTGGGCAGCGCGGTGTTTGCGGGGCTGTTTGGGGACATAATGATATAGCATACAGGTGTAGAACATGTGAACACGATCCAACCTGCGCAATCTGTGTACCTTGTTTTGAGAATGGGAATCACGAAGGCCATGATTACTTTGTGATATACACAGGCGGTGGTTGTTGTGATTGTGGAGATGTGACAGCGTGGAAGCGTGAGGGATTCTGCTCAAAGCATAAGGGTGCGGAGCAGATACAACCACTTCCTGAGGAGTTTGCGAATTCTGTGGAACCTGTGCTTAATTCTCTTTTCATGTGTTGGAAAGACAAACTAACATTTGCAGAAACTGTCCCTCCGGAAAACTCTAGATCAAGCAGCACTGTTGTTGAAAGAAAGAAGGCAGCTAATGAGCTAACCTTTGCAATGGTTGATATGCTTATAGAATTTTGCAAGCATAGTGAGAGTTTGCTTAGTTTTGTTGCCAGGATGTTATTCTCTTCTACTGGTTTACTTGCCGTTCTGTTGAAAGCTGAGAGGTTTCTAACCGATGTCGTTGTAAGAAAACTTCATGAGTTACTCCTGAAATTGCTGGGGGAACCTGTTTTCAAGTATGAGTTCGCTAAAGTTTTCCTCACTTACTATCCGACTGTCATAAGTGAGGCTATAAGAGAGTGCAGTGACCTTCCTCTGAAGAGGTATCCATTGCTATCCACGTTCTCTGTGCAGATACTTACAGTGCCCACTCTTACCCCTCGTCTGGTGAAGGAAATGAACCTCCTTACAATGCTGTTGGGATGTTTGGAAGACATTTTCTTTGATTGTGCTGGAGAAGATGGTCGATTACAGGTTGCAAGGTGGGGAAATTTGTATGAGACAACTATACGGGTTGTTGAAGATATTCGATTTGTTATGAGCCATGTGGTGGTTTCCAAATATGTCACCTATGATCAGAAGAATATCTCAAGAACTTGGATGAGACTCCTATCCTTTGTACAAGGGATGAACCCTCAAAAGAGAGAAAATGGTCAACATATAGAAGAAGAAAATGAGAATGTCCATTTACCTTTTGTTTTAGGCCACTCTATTGCTAATATTCATTCTCTTTTGGTGGATGGGGCGTTTTCAGATGCTAGTAAGGGAGAGTTGGACAATGAAATTATTCAGAGCTCAAATAAACAAGAATCAGATGATGGAGACAATTTACGACACGCAAAAGTGGGGCGGCTTTCCCAGGATAGCTCTGCATGTGGTATGACTGGTCGTAATAGTGCCTTTGCTTGTTCTTCAAAGGCTTCTGAGATAGAATCTAATGCCTCTTCTCATCTGGTATTTCCCCATTCTGTCATGTGGTTGATATGTGAGTGTTTAGGGGCCATTGAGAATTGGTTGGAAATTGACAATAAGAATTGGTTACTTCCTAATATTTCTTCTCCAAACAGTGGTAGCATCTATGACAGTAATATTTCAGCATTAAAGAGAACAATATCCAATATCAGAAAGGGTAAGATTTTTCGTAGGCTTGCAAGTTCAAGTGAAGATCATGGTAATTGCTTAGCTTCTGACCTGGAAAACAGTGAACATGCAATGAAGGATAGTAAACTGAAAGTTAATGGTGAATCTGAGTCAGATAATACCGATATTTCATCTGGTTTCAATGATAGCACAATGGAAACAGATGTTCCTGCAGAATTGGGTGGCCTTCGTTTTTTGTCTTTGTCTGATTGGCCACAAATTGTCTACGATGTTAGTTCGCAAGATATCTCTGTCCACATTCCCTTACATCGGTTACTTTCCATGCTGTTACAAAGGTCACTGAGAAGATATTTTGGTGAATCTGCAATTCCAGATGGGTCTGATGCTTGTTCAACTAATTCATTATCAACAATCTACACTGACTTCTTTGGACATGCTTTACGGAGCAGTCATCCCTATGGCTTTTCTTCCTACATAATGGAACATCCCTTGCGCATTAGGGTTTTCTGTGCTCAAGTTCATGCTGGAATGCGGAGGAAAAATGGAGATGCTGCTCTTTTATCTTGTGAATGGTACCGGTCTGTTCGCTGGTCTGAACGAGGGCTGGAGCTTGATCTATTTCTTCTTCAGTGTTGTGCTGCACTAGCTCCGCCAGATCTGTATGTCAGCAGAATTCTTGAGCGCTTTGGGCTTTCAAACTACCTATCCTTGAATCTTGAATGCTCAAGCGAGTATGAACCTGTTTTAGTACAGGAAATGCTCACTCTTTTGATTCAGATATTGAAAGAAAGGCGCTTTTGTGGGCTAAGTACTTCTGAAAGCTTGAGAAGAGAACTTATTTATAAGTTAGCCATTGGAGATGCCACTCATAGTCAGTTGGTGAAGTCTCTTCCTCGTGATATCTCCAAGTTTGAGCAGCTTCAAGAGATTTTAGATGCAGTTGCTGTATATTCTAACCCAACTGGTTTTAATCAGGGTATGTATTCCCTGCGATGGCCATTGTGGAAAGAATTGGATTTGTATCATCCTCGTTGGAATTCGAAGGATTTACAAGTTGCAGAAGAAAGATATTTACGCTTCTGTAGTGTCTCTGCGCTAACCACACAGATTCCCTGTTGGACCAAAATTTATCCGCCTCTGGAAGGGCTTTCAAGGATAGCCACTTGTAAAGTGGTTCTACAGATAATCCGTGCAGTTCTATATTATGCTGTTTTTACTTTTAAATCAGCTGAATCTCGTGCTCCTGATGCTGTTCTTCTAACTGCACTGCATTTACTGTCATTATCTTTAGATATCTGTCTTCAGCAGAAAGAATTTACTGACAAGACATTTGATGATGAGACACAAATTCCCATAATAGCTTTGTCTGGAGAAGTTATTGGTGAAAGCTCTGTTTATGGTGTTGGTGAACAGAGCTTGTTATCACTTCTTGTTAATTTGATGGGTTTGCACAGGAAGGAAAGTGCAGACAACTTTGTGGAAGCAGGTGGTGGCAACCTGTCTGCTTTAATTGAAGACTTACTGAAGAAGTTTGCTGAGATTGACAACAGATGCATGACTAAGTTGCAGCAACTTGCCCCTGAAGTTGTTAGTCATATATCTCAATGCCTTCCAAATAGAGACTTAGGTGATGTGGTTTCAGCTTCCGATAGTGAGAAACGCAAGGCAAAAGCCCGGGAGAGGCAGGCTGCTATGTTGGAGAAGATGAGAGCTCAACAGTCGAAATTTTTGGCAAGTGCTGGTTCCACCATTGAGGATAGTTCCCAAGTTGATCATGAATATGACTTTGATACTGGAGCTGATGCTGAAGAATCCACGCAAGTTGTTTGTTCTCTTTGCCATGATTACAACTCGAAACTTCCGATATCTTTTCTGATTCTTCTACAGAAATCTAGGCTTGTCAGTTTTGTTGATAGAGGTCCCCCAACGTGGGCACAACTTCGTCGGACAGATAAAGAACATATTTCTGTTTCCAACTTTAAGGCAACAGATACGTTGGCGATGGACTGGACTTCAGGCACTTCAGGGTCTACTTCGTCTTCTCACTTAGCCCAGTTGGTTTTGAATGCTACCAACGAATTGGTCTCTAGTGGGCAGCGTGGTGAAGTCAATGTTTTTTTGCAATATATAAAGGATCAGTTTCCAACATTGGGAAATATCCAGCTTCCTGATGCATCGTATGATGAAAAAGAGAAGATTCCATATACTTTTGAGACATTGGAACAGGATATGTACTTCTCCATTTGTGGAGAAATGAGCGATGATAATAAAATTTCTACTTCAGGAGGGGACCCAAACATTGGTAGAGATGCTGGATCTGTCTTGCTTGGAAAATACATAGCTGATATTGCAAGAGACATATCGAAAAACTCTTCAGTATCTGAACATGTTCACGGTGAGAATACTTCTGTAGAATCTACTGTGCAGCACCATGCAAACGGTTCATTTGGCCCAACAGATTGTGATGGGCTTCATCTTTCTTCCTGTGGTCATGCAGTACATCAGGAATGCCTTGATCGTTATTTATCTTCACTGAAGGAAAGGTCTGTCAGAAGAATTGTTTTTGAAGGAGGACATATTGTTGATCCAGACCAGGGTGAATTTCTTTGCCCTGTATGCCGCCGGCTTGTAAACTGTGTCTTGCCTACTATACCTGGAAACTTAGAGAAGCCTTTGAAGCAGCCTACAGGTTTAATTAATGGCTCACTACCTGCTACTGATCCTGTGGCTGCATCAAGTAAAGAGATTTATTCACTCCGCCTTTGGCAAGCCTTGAAGATCTTGCAATCTGCTGCTAATGCTGTTGGGAAGGACGAATTCCAAAAAGCTGTTCCTTTGCGGCAGAGTGATAAAACAGGCCAAAATCTTGAGCATTTCTCTCGGATGTTGGCTAAAATGTATGTGCCAAACAAACAAGATAAATTATCAAGATCTGCAAGATTAAATCACTCAATGCTCATGTGGGACACTCTTAAGTACTCCATGATGTCAATGGAGATTGCTGCACGATGTGGAAAAACCTACTTAACTCCAAACTATGCTCTTGGTACCATGTATGAAGAACTTAAGTCTTCGAGTGGATTTATTTTATCCTTGCTGTTGAAACTTGTTCAGAAGTCAAGGAGTAAGAATTCTCTTCTTGTGCTTCAAAGATTTAGAGGTCTTCAACTCTTTGCAGAATCTATTTGTTCTGGGGTGTCTCAGAGAGATGATATGTTATCTATCTTAAAACATGTTGAAGGGGACCCATCTAACTCCGACGTCCTATTTTGGAGGCGAGCCTCTGACCCTGTACTTGCACATGACCCCTTTTCAACCTTTATGTGGATTCTCTTTTGTCTTCCATCCCCGTTTTTGTCTTGTGAAGAATCTTTGTTATCCCTTGTGCATGGTTTCTACATAGTAGCTGTAACTCAGGCTATTATTTTGTATTGTGTGAAAACCCAGCATAAATTAAGTGAATTAGGTGTTTCTGATTGCCTAATCACTGACATATATAAGGTTATGGGTGAATCTGGATGCACTCAGCAGTATTTTGTGTCAAACTATTTTGACCCGAGTGCTGATGTTAAAGATGTAATTAGGAGATTCACTTTCCCCTATTTGCGAAGATGTGCACTGTTGTGGAAAATACTATATTCTTCAATTCCAGCACCATTCTGTGATGAGGACAATGTATTAGATAGATCATCGAGTTATACAAATGACACAATGGTTGGACCTAATGTTGACATGTTTGAGATTACTAAAATTCAAGAACTTGAGAACATGTTTAAGATTCCTGCCCTTGATGTGGTTCTGAAGGATGAATTTTCAAGATCTTCAGTCTCTATTTGGTGCCGTCAATTCTGCAAGGAATTTGAACTAGCTGGGGTTCAACGTAACATGCATTTAACCCCTGTAGTTCCATTTGAATTGATGAGATTGCCAAATGTTTATCAGGATCTTCTGCAGAGGTGTATCAAACAGCGCTGCCTTGAATGCAAGTCTCTTCTTGATGAGCCTGCATTGTGCCTGCTGTGTGGTAGATTGTGCTCCCCAAGTTGGAAATCTTGCTGCAGGGAAAGTGGTTGCCAAAGACATGCTATAGCCTGTGGAGCGGGTACTGGAGTGTTTCTATTGATTAGGAGGACAACAATCCTACTTCTAAGATCTGCACGTCAAGCTCCCTGGCCCTCTCCTTACTTGGATGCTTTTGGTGAGGAGGATTTTGAAATGCATCGAGGCAAACCTCTTTACCTGAATGAGGAACGTTATGCTGCCTTGACCTACATGGTTGCTTCTCATGGCCTGGACCGAAGTTCCAAGGTTCTGGGCCAGACTACCATTGGATCCTTCTTCTTGGAATGTTGGCTGGCAGATAACTGGAAGCTTGGCTCTTGTGGGATACTCTACCTTCTGGATGTGGCTGTACAGCTTGTTGATCGAGACAACCATATCGTTGTGCTTCTGCTTTTTGTTGAGCAATCCCCTCATTTTTCTGGGTTTGGGAACAAACACTATGGATGCCATTGCATGTGCTTGTATATTAAGTCACATACAACTGATTTTCACTGTCAATATGGCTCATTTGGGAAGACATTGGGCTTACTGCCCCTAGAGGACGGACTTGATAAAAATTTCAAAGGAATTCCTCTTTCTAAGATGGGGGCTACAAATCTGCAAGTTATTGAGTGCCGCGTGGATTGGGAAGTCATTGTGATTCCTGTATTCTATATTAGCTTTTCAAAATTGGCAAGATCTCCTTTGGAAAAATTCATCCAGCTTTGA 6903 0.421 MSPRRELSKPVNPFHLLSFSRSLEDFDYPKEEERNRESKDIESGERRRKVSLWGGVGWGGFSITGGVGDFSLELNLLAPSEEANLGSESSGFGRWFCCVDWLLRFWRPVMVDNMEIDSPSESQPLKPRDRIIRRLLQFGVPEDQLDQPPLVDFIKDKKSLIPELVSVILPTDEEVAEALQDSKFGSKKSSLGVTMKKRFHESMAWLQWLMFEGDPAAALRNLSKLSIGQRGVCGAVWGHNDIAYRCRTCEHDPTCAICVPCFENGNHEGHDYFVIYTGGGCCDCGDVTAWKREGFCSKHKGAEQIQPLPEEFANSVEPVLNSLFMCWKDKLTFAETVPPENSRSSSTVVERKKAANELTFAMVDMLIEFCKHSESLLSFVARMLFSSTGLLAVLLKAERFLTDVVVRKLHELLLKLLGEPVFKYEFAKVFLTYYPTVISEAIRECSDLPLKRYPLLSTFSVQILTVPTLTPRLVKEMNLLTMLLGCLEDIFFDCAGEDGRLQVARWGNLYETTIRVVEDIRFVMSHVVVSKYVTYDQKNISRTWMRLLSFVQGMNPQKRENGQHIEEENENVHLPFVLGHSIANIHSLLVDGAFSDASKGELDNEIIQSSNKQESDDGDNLRHAKVGRLSQDSSACGMTGRNSAFACSSKASEIESNASSHLVFPHSVMWLICECLGAIENWLEIDNKNWLLPNISSPNSGSIYDSNISALKRTISNIRKGKIFRRLASSSEDHGNCLASDLENSEHAMKDSKLKVNGESESDNTDISSGFNDSTMETDVPAELGGLRFLSLSDWPQIVYDVSSQDISVHIPLHRLLSMLLQRSLRRYFGESAIPDGSDACSTNSLSTIYTDFFGHALRSSHPYGFSSYIMEHPLRIRVFCAQVHAGMRRKNGDAALLSCEWYRSVRWSERGLELDLFLLQCCAALAPPDLYVSRILERFGLSNYLSLNLECSSEYEPVLVQEMLTLLIQILKERRFCGLSTSESLRRELIYKLAIGDATHSQLVKSLPRDISKFEQLQEILDAVAVYSNPTGFNQGMYSLRWPLWKELDLYHPRWNSKDLQVAEERYLRFCSVSALTTQIPCWTKIYPPLEGLSRIATCKVVLQIIRAVLYYAVFTFKSAESRAPDAVLLTALHLLSLSLDICLQQKEFTDKTFDDETQIPIIALSGEVIGESSVYGVGEQSLLSLLVNLMGLHRKESADNFVEAGGGNLSALIEDLLKKFAEIDNRCMTKLQQLAPEVVSHISQCLPNRDLGDVVSASDSEKRKAKARERQAAMLEKMRAQQSKFLASAGSTIEDSSQVDHEYDFDTGADAEESTQVVCSLCHDYNSKLPISFLILLQKSRLVSFVDRGPPTWAQLRRTDKEHISVSNFKATDTLAMDWTSGTSGSTSSSHLAQLVLNATNELVSSGQRGEVNVFLQYIKDQFPTLGNIQLPDASYDEKEKIPYTFETLEQDMYFSICGEMSDDNKISTSGGDPNIGRDAGSVLLGKYIADIARDISKNSSVSEHVHGENTSVESTVQHHANGSFGPTDCDGLHLSSCGHAVHQECLDRYLSSLKERSVRRIVFEGGHIVDPDQGEFLCPVCRRLVNCVLPTIPGNLEKPLKQPTGLINGSLPATDPVAASSKEIYSLRLWQALKILQSAANAVGKDEFQKAVPLRQSDKTGQNLEHFSRMLAKMYVPNKQDKLSRSARLNHSMLMWDTLKYSMMSMEIAARCGKTYLTPNYALGTMYEELKSSSGFILSLLLKLVQKSRSKNSLLVLQRFRGLQLFAESICSGVSQRDDMLSILKHVEGDPSNSDVLFWRRASDPVLAHDPFSTFMWILFCLPSPFLSCEESLLSLVHGFYIVAVTQAIILYCVKTQHKLSELGVSDCLITDIYKVMGESGCTQQYFVSNYFDPSADVKDVIRRFTFPYLRRCALLWKILYSSIPAPFCDEDNVLDRSSSYTNDTMVGPNVDMFEITKIQELENMFKIPALDVVLKDEFSRSSVSIWCRQFCKEFELAGVQRNMHLTPVVPFELMRLPNVYQDLLQRCIKQRCLECKSLLDEPALCLLCGRLCSPSWKSCCRESGCQRHAIACGAGTGVFLLIRRTTILLLRSARQAPWPSPYLDAFGEEDFEMHRGKPLYLNEERYAALTYMVASHGLDRSSKVLGQTTIGSFFLECWLADNWKLGSCGILYLLDVAVQLVDRDNHIVVLLLFVEQSPHFSGFGNKHYGCHCMCLYIKSHTTDFHCQYGSFGKTLGLLPLEDGLDKNFKGIPLSKMGATNLQVIECRVDWEVIVIPVFYISFSKLARSPLEKFIQL 2300
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele42g0039 2300 ProSiteProfiles Zinc finger UBR-type profile. 231 301 IPR003126 GO:0008270
Lele42g0039 2300 SUPERFAMILY "Winged helix" DNA-binding domain 984 1070 IPR036390 -
Lele42g0039 2300 SMART push_1 231 300 IPR003126 GO:0008270
Lele42g0039 2300 Pfam Proteolysis_6 C-terminal 1676 2138 IPR044046 -
Lele42g0039 2300 PANTHER UBIQUITIN LIGASE E3 ALPHA-RELATED 154 2158 IPR039164 GO:0061630|GO:0071596
Lele42g0039 2300 CDD RING-H2_UBR1_like 1533 1593 - -
Lele42g0039 2300 FunFam Putative e3 ubiquitin-protein ligase ubr3 233 301 - -
Lele42g0039 2300 Pfam Putative zinc finger in N-recognin (UBR box) 233 299 IPR003126 GO:0008270
Lele42g0039 2300 Gene3D - 233 301 - -
Lele42g0039 2300 Gene3D - 980 1074 IPR042065 -
Lele42g0039 2300 MobiDBLite consensus disorder prediction 749 774 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele42g0039 Lele-ChrLele42 276644 293293 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele42g0039 129 2158 Acyl Lipid Metabolism Gene Families AT5G02310 52.580 0.0 1915
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele42g0039 42 276644 293293 Lele37g1313 37 22194043 22197901 CCT
Lele42g0039 42 276644 293293 Lele39g0099 39 674188 677155 CCT
Lele42g0039 42 276644 293293 Lele40g1147 40 21528300 21535580 CCT
Lele42g0039 42 276644 293293 Lele42g0039 42 276644 293293 ECH
Lele42g0039 42 276644 293293 Lele43g1321 43 21308493 21325354 hybridization
Lele42g0039 42 276644 293293 Lele44g1313 44 21360687 21380157 hybridization