Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele42g0038 ATGCAATATATGGCTGAATTGAAATCAGAAGAGTGTTGTCTAGAGAATAAGCAATCTACTGCTGGCTCTACCTCCTCTATCTCTGAAGGCAGTGCCGGTGCTATACACAAGTCCCCCGGAAGATGTAGTCCAGCATCAACATCACCCTCCCATCGGAGGACCACTGGCCCCATCAGGCGTGCAAAGGGCGGTTGGACAGCCCAGGAGGATGAGACATTGAGGAATGCTGTTGCAGCTTTCAAGGGCAAGAGTTGGAAGAAAATAGCTGAGTATTTTCCTGATAGATCAGAAGTGCAATGTCTGCACAGATGGCAAAAGGTTCTTAATCCTGAACTTGTTAAAGACCCTTGGACTCCTGAGGAGGATGACAAAATTGTTGAACTGGTATCAAAATATGGGCCAGCAAAATGGTCTATGATAGCTAAATCTTTGCCTGGTCGCATCGGGAAACAGTGTCGAGAGCGATGGCACAATCATCTTAATCCTGAAATAAAGAAGGAGGCCTGGAATTTGGAGGAAGAGCTGGCCCTCATGGATGCTCATCACATACATGGGAACAAGTGGGCTGAAATAGCTAAGGTTTTACCTGGAAGGACTGATAATGCAATAAAGAATCACTGGAATAGTTCATTGAAGAAAAAATTAGAATTTTATTTAGCTACAGGAAACCTTCCACCAAATCAAAAGAACAATGCACAAGGTGGTGTGAAAGATACAATAAGACGCTCTGCTAGTAAAACTGTACATGCTTGCTCAAATAAAGTATTAGATACAGCTGCTGATACATCATCAGAAAATACAGACAATACTAAAGATGGCAGTGGAAAGAATCAACTAGAGTCATTGGGAACAGTGAGAGAGTTTGGTAATTATCTGAGCGTTCCTGCAAATGAAGGTGCTGATTCTGACTTTGTAGAATGGAAGCCCAGATCATCCAATCTAGATCTCGGCTACAGCAACGCAGAACCAGTGTCAAGGGATAATTTTTTATTGACCAGTGACCTAAAATTTGATAACACTGGACTGAATGGCAAGCATAAAGTTGAGAATTTTGTGAATAATGGTAAAATGAGCGGTAGCAGGCTAATTAATACATCTTTTTCACAGCATAGTCCAGCCTCTAGTTCTTTGTGTTATGAGCCTCCATTATTGGAGAGCACGGTTCCTTTAGATTCCATTTATTTAAGTACGTATGGCCTGCAGAACGAGTACAATGCTACTGCAGTGATGTCACCTGTTGGTTTCTTCACTCCACCTTGTGTGAAGGGCAGTGAATTTTGCACAGAGACTCCGGAAATAATATTGAAAATGGCTGCTAAAACTTTCCCATATACTCCTTCCATATTGAGGAAGAGAAAGAATAGAGTCCAAGCACATGTAACTCCTTGTAAAGTTGTGAAAGTGGATGATGGATTTCATACTCCTAATGAACAGGAGGAAACCAAGTATAATGCTGGTTCTGGGTGTGGAGAGCTCTGTGAGAGTCTGGCAAGGGATGACAGTCTAAATAATAAGGCTTTCAATGCTTCTCCCCCTTACTGGTTAAGATTCAAGCGAAAAGCATTTGTCAAGTCAGTGGAGAAACAACTTGAGTTTGCTTTTGATCAAGAGAAGCATGATGGCAACAAAATTGAAAAATCTGCTAGGAGCACTGCGATGGCTGGAGATTGTTTGCCTGAAACGGAAGTGGCAGTGACCTAG 1701 0.4221 MQYMAELKSEECCLENKQSTAGSTSSISEGSAGAIHKSPGRCSPASTSPSHRRTTGPIRRAKGGWTAQEDETLRNAVAAFKGKSWKKIAEYFPDRSEVQCLHRWQKVLNPELVKDPWTPEEDDKIVELVSKYGPAKWSMIAKSLPGRIGKQCRERWHNHLNPEIKKEAWNLEEELALMDAHHIHGNKWAEIAKVLPGRTDNAIKNHWNSSLKKKLEFYLATGNLPPNQKNNAQGGVKDTIRRSASKTVHACSNKVLDTAADTSSENTDNTKDGSGKNQLESLGTVREFGNYLSVPANEGADSDFVEWKPRSSNLDLGYSNAEPVSRDNFLLTSDLKFDNTGLNGKHKVENFVNNGKMSGSRLINTSFSQHSPASSSLCYEPPLLESTVPLDSIYLSTYGLQNEYNATAVMSPVGFFTPPCVKGSEFCTETPEIILKMAAKTFPYTPSILRKRKNRVQAHVTPCKVVKVDDGFHTPNEQEETKYNAGSGCGELCESLARDDSLNNKAFNASPPYWLRFKRKAFVKSVEKQLEFAFDQEKHDGNKIEKSARSTAMAGDCLPETEVAVT 566
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele42g0038 566 FunFam Transcriptional activator Myb isoform A 114 166 - -
Lele42g0038 566 SMART sant 113 162 IPR001005 -
Lele42g0038 566 SMART sant 61 110 IPR001005 -
Lele42g0038 566 SMART sant 165 213 IPR001005 -
Lele42g0038 566 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 108 IPR017930 -
Lele42g0038 566 Pfam Myb-like DNA-binding domain 117 175 - -
Lele42g0038 566 SUPERFAMILY Homeodomain-like 111 207 IPR009057 -
Lele42g0038 566 ProSiteProfiles Myb-like domain profile. 109 160 IPR001005 -
Lele42g0038 566 ProSiteProfiles Myb-like domain profile. 57 108 IPR001005 -
Lele42g0038 566 SUPERFAMILY Homeodomain-like 59 115 IPR009057 -
Lele42g0038 566 CDD SANT 116 160 IPR001005 -
Lele42g0038 566 Pfam Myb-like DNA-binding domain 62 108 IPR001005 -
Lele42g0038 566 MobiDBLite consensus disorder prediction 259 278 - -
Lele42g0038 566 MobiDBLite consensus disorder prediction 18 32 - -
Lele42g0038 566 FunFam Transcriptional activator Myb isoform A 61 113 - -
Lele42g0038 566 CDD SANT 168 211 IPR001005 -
Lele42g0038 566 MobiDBLite consensus disorder prediction 18 66 - -
Lele42g0038 566 FunFam Transcription factor MYB3R-2 167 231 - -
Lele42g0038 566 Gene3D - 113 166 - -
Lele42g0038 566 Gene3D - 61 112 - -
Lele42g0038 566 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 109 164 IPR017930 -
Lele42g0038 566 ProSiteProfiles Myb-like domain profile. 161 211 IPR001005 -
Lele42g0038 566 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 165 215 IPR017930 -
Lele42g0038 566 PANTHER MYB PROTEIN-RELATED 62 147 - -
Lele42g0038 566 Gene3D - 167 241 - -
Lele42g0038 566 CDD SANT 65 108 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele42g0038 Lele-ChrLele42 266165 275484 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele42g0038 52 545 MYB Transcription Factor Family AT5G02320 49.805 4.27e-140 413
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lele42g0038 Myb_DNA-bind_6 3.1e-17 CL0123