Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele42g0028 ATGGTTTTTTCTTCCATGCATCCTTATCTTGATCCAGCCAACTGGCCGCAACAACAGCCGACTCATCAGATTGGAAGTAGCAGTGACCCAGGTTCTCAGCTCCTTCCTCCTCCGCCGCCGCCACTGCCACCTACTCAGACTCATGGAGCTAGTGGCTCTGGCTCCATCCGGCCTGGTTCCATGGCTGATAGGGCTCGGATGGCCAACATACCGATGCCAGAGGTGGCGCTCAAATGCCCTCGCTGCGATTCCACCAATACTAAGTTTTGCTACTTCAACAACTACAGCCTATCTCAGCCTCGCCACTTCTGCAAGACCTGTAGAAGGTACTGGACCCGAGGTGGGGCCCTGAGAAATGTCCCGGTCGGCGGGGGATGCCGAAGGAACAAGAGAAATAAAGGAAGCAGCTCAAAGTCGCCGCAGGTGAGCTCAGATCGCCAGACAGGCAGTGCTACTTCGACCAACTCTGTGTCTTCCAACAGTGCTTCTGCTGCTGATATGGTAGACCTTTCGCCTCAGCTTTCATTGCTGAGGTTCTCGGCTCCTGCTTTGCATCAACTCACTGAGTTTGGCTCCGGAGAGATGGGGTTGAACTATGGTAACTTGAGTAATCAAATGGGAGGAGTTGGTGACTTAAGTTTCCATTTAGGAACCGTTTTGGCTGGAGGAGCAAGCAGTAGTGGCAGCTCGATCTTATCCGCCGCCGGGTTAGATCAGTGGCGGATGTCACAAACACAACAATTTCCCTTCTTAACTGGTTTGGAAGCTTCTCCTGATTTGTACCAATTTCAAAGTGGAGCTGCAGTGCCGGGATATGGTGGCAGCGCAAGTCATCAACTCCGACCAAAGGTGCCAACTGGGGTGATAACTCAAGTAGCTTCAGTGAAAATGGAAGACCATAATCATCACCAGGAACTAAATTTGTCAAGGCGCTTCTTGGGGATGAATAATAATTCAACAAATCATGAGCAGTATTGGAATACTACGGCCGGTAATTCTAATTCTACTGCTGCTAATTGGACTGAGCTTTCTGGGTTTCGCTCTTCAACTACTAGCAACAATCCACCGTAG 1071 0.5042 MVFSSMHPYLDPANWPQQQPTHQIGSSSDPGSQLLPPPPPPLPPTQTHGASGSGSIRPGSMADRARMANIPMPEVALKCPRCDSTNTKFCYFNNYSLSQPRHFCKTCRRYWTRGGALRNVPVGGGCRRNKRNKGSSSKSPQVSSDRQTGSATSTNSVSSNSASAADMVDLSPQLSLLRFSAPALHQLTEFGSGEMGLNYGNLSNQMGGVGDLSFHLGTVLAGGASSSGSSILSAAGLDQWRMSQTQQFPFLTGLEASPDLYQFQSGAAVPGYGGSASHQLRPKVPTGVITQVASVKMEDHNHHQELNLSRRFLGMNNNSTNHEQYWNTTAGNSNSTAANWTELSGFRSSTTSNNPP 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele42g0028 356 ProSiteProfiles Zinc finger Dof-type profile. 77 131 IPR003851 GO:0003677|GO:0006355
Lele42g0028 356 ProSitePatterns Zinc finger Dof-type signature. 79 115 IPR003851 GO:0003677|GO:0006355
Lele42g0028 356 MobiDBLite consensus disorder prediction 32 46 - -
Lele42g0028 356 MobiDBLite consensus disorder prediction 11 60 - -
Lele42g0028 356 MobiDBLite consensus disorder prediction 121 164 - -
Lele42g0028 356 MobiDBLite consensus disorder prediction 11 31 - -
Lele42g0028 356 Pfam Dof domain, zinc finger 76 131 IPR003851 GO:0003677|GO:0006355
Lele42g0028 356 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 62 274 IPR045174 GO:0003700|GO:0006355
Lele42g0028 356 MobiDBLite consensus disorder prediction 135 164 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele42g0028 Lele-ChrLele42 213731 214975 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele42g0028 56 328 C2C2-Dof Transcription Factor Family AT5G02460 43.131 1.04e-55 185
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Lele42g0028 zf-Dof 3.1e-32 No_clan