Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele42g0027 ATGCAAAGTATAGGTGGTAATATAGCCATGGAGGAAGAAAACGCTTTGGATGTTAACGAAATCTGGCTTCAAGATGAACACGACGATCTTCTTGGTGTGAATGATGCCTCTATGTTCTATGCTGATTTCCCTCCTCTTCCAGATTTTCCATGCATGTCATCCTCTTCGTCATCTTCCTCCACTCCAGCACTTCAAGTCAAGACCACCACGTGCTCCACCACATCTTCATCCTCTACCGCTACGTCATCGTCGTCCTCTGCTGTGTCATGGGCAGTTCTGAAGTCCGATGATACCGAGGATAATCTTCGGGTGGAGAAGCCGCCGCTGCAGCGGCCACTAGCAACCTTGGCCTCCACCACTTCCACTGGTCTCCCTTTCCCGCCTGAAAATTGTGCTGTCGAGATGGAGGAGCCTTTTCCGTACTTGGACATGTTAGAGATCAACGATTTCTTCGACCCGGCATTAGTTTTTCAAGATGAGGATTGCCCATTAGAAGAATATCCCCAGAATCAGATAGAGAGGCAGCAGGAGCAACATACAACTACGCTGCAGCAGCAACCAGAGGATCAAGATCTACATATGCTCTCTAATGACAATAACTGTGAAGAAGAGAGTCAAGGAAAAGGAGGAAACCCAGATGGGGAAATGAGCGATGTGTTCTTGGAGTGGCTCAAAACGAACAAGGATAGCGTATCTGCAAATGACTTGAGGAACGTGAAGCTCAAAAAATCAACCATAGAGTGTGCTGCTAAGCGCTTAGGAGGAGGAAAAGAAGCCATGAAGAAATTGTTGAAGCTTATTCTTGAATGGGTTCAAACCAGTCATCTTCAAAACAAAAGGCGCTGTAGTAAGGAGAATAATATGAATAATAATAATGATAGTGAGCCTTCAAATTTCCTCACAAACCCTAGCTCTAATTCCAACTCAAATTTATTTGGAATACCTGAGTCATGTCCATGGGTTTCTCCTTCGCAGCCTTATGGGACAGATCCGGCGACTATGGTAGCCGTGCCGCCACCTTCTTATTCGGTGATTGGGTATCCGGGTGACCCATATACAAATGGAGCTTCGAATAATATCAATTCTTACCAACCTGCTAGTACTGAATATAACATGTTGGAAGCAGCCCATTCATGGCCTACATCTCAGTTCACGGTTGCTGCCCACTGCAACCAGTCATATGGGGACAATAACGTTCACCCAGCTGGCCCACCAGTAGCGGAGGGATTTGGCGGCTATGTGAATCAGTATTCATATCATTATTTTCATTGCGTGGCGGCTGGTGATAAGTTAATGAGGTTAGGTCCCTCGGCGACCAAAGAAGCAAGGAAGAAGAGGATGGCGAGGCAGAGAAGGTATTTGACTCATCATAGGAGCCAGAAACACCATAGCCAACTACAGAATCATGATAATAATGACCCACTTGCAAGATTGGGAAGTGATTATAATTGCACCGGAGGTTCTACGAATCCGGCCAATTGGGTGTACTGGGGGTCAATTGCCGGAGGGTCTGCTTCCTTGGTTCCAGCCGTTTCGGCTGAACCCCGGCCGGCTTTGGATCGGACGGCCATGCAAACTCAGAATTATCAAACTAGAGTCCCATCAACAGATCAAAGGCATCAGGGATTGAAGACAGAGAAGAACTTGAAGTTTCTTCTTCAAAAGGTGTTGAAGCAAAGCGACGTTGGTAGCTTGGGGAGAATCGTGTTGCCGAAAAAAGAGGCAGAAACCCACTTGCCAGAATTAGAGGCGAGAGATGGGATTTCTATAGCAATGGAAGACATTGGAACATCTCTTGTTTGGAACATGCGCTACAGATACTGGCCAAACAACAAAAGCAGGATGTATCTGCTCGAGAACACTGGAGATTTCGTGAAGGCGAATGGACTGCAAGAGGGAGACTTCATAGTGTTGTACTCAGATGTCAAGTGTGGCAAATATTTGATAAGAGGAGTGAAAGTAAGGCAAGCGGCGGGTGGGGCGAAAACAGATCACGGCAAGAAAGCCGGAAAAATGCAGAAAGGCCTCGCCACAGCGGCGGCTGCTAATAACGACTCGCCGTCACCTCTGAAAAAGTTTAGAAAAGAGAAGGAAGATGTGGATTTGGACATTTCTCCAGCTTGGGCTTTTTGA 2133 0.4665 MQSIGGNIAMEEENALDVNEIWLQDEHDDLLGVNDASMFYADFPPLPDFPCMSSSSSSSSTPALQVKTTTCSTTSSSSTATSSSSSAVSWAVLKSDDTEDNLRVEKPPLQRPLATLASTTSTGLPFPPENCAVEMEEPFPYLDMLEINDFFDPALVFQDEDCPLEEYPQNQIERQQEQHTTTLQQQPEDQDLHMLSNDNNCEEESQGKGGNPDGEMSDVFLEWLKTNKDSVSANDLRNVKLKKSTIECAAKRLGGGKEAMKKLLKLILEWVQTSHLQNKRRCSKENNMNNNNDSEPSNFLTNPSSNSNSNLFGIPESCPWVSPSQPYGTDPATMVAVPPPSYSVIGYPGDPYTNGASNNINSYQPASTEYNMLEAAHSWPTSQFTVAAHCNQSYGDNNVHPAGPPVAEGFGGYVNQYSYHYFHCVAAGDKLMRLGPSATKEARKKRMARQRRYLTHHRSQKHHSQLQNHDNNDPLARLGSDYNCTGGSTNPANWVYWGSIAGGSASLVPAVSAEPRPALDRTAMQTQNYQTRVPSTDQRHQGLKTEKNLKFLLQKVLKQSDVGSLGRIVLPKKEAETHLPELEARDGISIAMEDIGTSLVWNMRYRYWPNNKSRMYLLENTGDFVKANGLQEGDFIVLYSDVKCGKYLIRGVKVRQAAGGAKTDHGKKAGKMQKGLATAAAANNDSPSPLKKFRKEKEDVDLDISPAWAF 710
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele42g0027 710 MobiDBLite consensus disorder prediction 279 306 - -
Lele42g0027 710 SUPERFAMILY DNA-binding pseudobarrel domain 552 646 IPR015300 -
Lele42g0027 710 CDD BfiI_C_EcoRII_N_B3 551 652 - -
Lele42g0027 710 Pfam B3 DNA binding domain 554 649 IPR003340 GO:0003677
Lele42g0027 710 MobiDBLite consensus disorder prediction 660 693 - -
Lele42g0027 710 SMART B3_2 553 655 IPR003340 GO:0003677
Lele42g0027 710 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 205 671 IPR044800 GO:0003700
Lele42g0027 710 FunFam B3 domain-containing transcription factor FUS3 549 664 - -
Lele42g0027 710 ProSiteProfiles B3 DNA-binding domain profile. 553 655 IPR003340 GO:0003677
Lele42g0027 710 MobiDBLite consensus disorder prediction 444 463 - -
Lele42g0027 710 Gene3D - 543 663 IPR015300 -
Lele42g0027 710 MobiDBLite consensus disorder prediction 193 216 - -
Lele42g0027 710 MobiDBLite consensus disorder prediction 439 474 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele42g0027 Lele-ChrLele42 201468 204502 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele42g0027 20 688 B3 DNA Binding Superfamily AT3G24650 43.172 1.58e-143 435
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Lele42g0027 B3 3e-17 CL0405
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele42g0027 42 201468 204502 Lele42g0027 42 201468 204502 ECH
Lele42g0027 42 201468 204502 Lele43g1334 43 21412676 21415205 hybridization
Lele42g0027 42 201468 204502 Lele44g1324 44 21442141 21444849 hybridization