Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele42g0026 ATGCCGCCAAGGCCGAGGCGGTTCTTGAGCAACCACAACAATCACCACCAAATGCCGAGGCACCAATCTTTCTCTCTTCTTCATCTTCCCTTCTTCAACCTTCTTTTTCTGCTTCTTCATCATGTTTCGTCTGCTTCAAACAATGAAGCTCAAGTTCTATTTTCATGGCTCCACCTTTCCTCCTCCTCTGTTCCTCCGTCGTCTTTCTCCGATTGGAACCCTTCAAACCCCAACCCTTGTAACTGGTCATTCATCAAATGCTCTCCACAAAACTTCGTCACAGAGATAAACATTCAAGCAACTGAATTAAAGCTTCCTTTTCCTCCCAACATTTCATCTCTTCCCTTTCTTCAGAAACTTGTCATTTCCGGATCTAATCTTTCTGGGTTGATCTCACCTGATATTGGAAACTGCCCTGAGCTCACAACCATTGATCTTAACTCAAATAATCTTGCCGGTATAATTCCTTCCAGCATTGGCAAGCTAAAAAACCTCCGAGATTTGAGCTTGAACTCTAACCAGCTTTCTGGGGAAATCCCCAAAGAGCTTGGTGATTGTGTTAGTTTGAAGAACCTTAATATTTTCGATAACAATCTTAGTGGAGCTCTTCCTGCTGAGTTGGGAAACCTTTCAAATCTGGAGGTTATAAGAGCCGGAGGAAACAATGGCATTATGGGGAATATTCCTGATGCTCTTGGGGATTGCATGAATTTGACTATATTAGGTCTGGCTGACACTAAAATCTCCGGCTCATTGCCTGCTTCTTTAGGTAAGTTAAGGTTGCTTCAAACGATTTCTATTTATAATACTATGTTGTCTGGTGAGATTCCTCCTGAAATAGGAAATTGCTCTGAGCTGTTGAACTTGTTTTTGTATGAGAATGAACTATTTGGTTCACTGCCAAAAGAGCTGGGTAAGCTTCAAAAGCTTGAGAAAATGTTGCTGTGGCAGAACAAGTTTTCTGGAAGCATACCTCCAGAAATTGGTAGCTGTAGAAACTTGAAGATTCTTGATGTTTCTTTAAACTCTTTGTCTGGAACCATACCTACTACTTTTGGAAACCTCTCAAATCTTGGAGAGCTTATGTTAAGTAACAATAACTTATCTGGTTCAATCCCGCCGGTTCTTTCCAATCTTTCGGAGCTCATACAGCTTCAGATAGATACTAATCAAATATCTGGTTCGATTCCTGCTGAACTTGGAGAGTTGAAGAAGCTTACTGTCTTTTTTGCTTGGCAAAATAAACTTAAAGGAATCATTCCTTCTGAATTGGGTGGTTGTGCTAGCCTAGAAGCTCTTGATTTGTCATATAATGCACTCACTGATAGCTTACCTCCAAGCTTATTTCAGCTTCAAAATTTGACAAAGCTTCTGCTAATCTCTAACCATCTTTCTGGGCCTATACCCCATGAAATTGGTAATTGTAGCTCTCTCATTCGGCTCCGTCTCTTGAACAACCGGATTGGTGGAGAGATTCCAAGAGAACTTGGTTTTCTCAATAACTTGAATTTCCTTGATCTGTCAGAGAATAATCTTACTGGTTTAGTGCCAATCGAGCTAGGAAATTGCAAAGAACTGCAAATGCTGAACCTTAGCAATAACTCCCTTTCTGGTGTTTTACCTAGCTCTTTATCTTCGCTCACAAGGCTTGAGGTTTTAGATGTTTCTCTGAATCACTTCTCTGGTGAAATTCCTACGAGCATTGGCCAACTCACTTCACTTATTAGGCTTATCCTTGACAGAAACTCGTTCTCTGGATCAATACCCTCATCAGTAGGCCTTTGTTCAAGTCTTCAACTTCTGGATCTCAGCAGCAACAATCTCTCAGGAAGCATCCCATCAGAACTATTTGATATAGAAGCACTTGACATTGCTTTGAATCTGAGTCACAATGCATTGTCTGGAGTAATCCCACCACAGATTTCTTCTCTAAATAAGCTCTCTGCTCTAGACCTTTCCCACAACAAGCTTGAAGGAGATCTGGTGGCACTTTCAGGACTTGAAAATCTTGTTTCTCTCAACATCTCCTTCAACATGTTCACCGGCTATCTTCCGGACATCAAGTTATTCCACCAATTGTCACCAACAGATTTGGAAGGAAATCAGGGGTTGTGTCCGAGTGGCCGAGATTCGTGCTTCATTAGCAATTCTGCAATGACAAAAATGCAAAATAATAGCGATTCTAAAAGGGCTGAGAGAATCAAATTGGGCATAGGATTGCTAAGTGCCTTCACCATTGCAATGGCAGTCTTTGGGATTCTTACGGTGCTTCGAGCAAAGAAAATGGCTCAGGAAGACAACGATTCAGAGATGGGAGGGGATTCATGGCCTTGGCAGTTCTCGCCATTTCAAAAATTAAACTTCTCCATCGATCAAGTCCTGAAATGTTTGGTTGACTCTAATGTGATAGGAAAGGGATGTTCCGGGGTCGTTTATCGTGCAGAACAAGAAAACGGTGATGTCATTGCTGTGAAAAAACTATGGCCAACAACAATGGCTGCTAGATATGATTGCCAACAAAATGACAAGCTAGCAGTTCATGGAGGAGGAGTTCGCGATTCCTTCTCAGCCGAGGTTAAAACCCTGGGTTCCATCCGACACAAGAACATTGTGAGGTTTCTCGGTTGCTGTTGGAATCGAAGTACTAGGCTACTTATGTATGACTACATGCCAAATGGGAGCCTAGGAAGTTTGCTTCATGAACGAAGTGGTGGAAACTGCTTGGAGTGGGACATCAGGTATCGGATATTGCTGGGAGCAGCTCAAGGCTTGGCTTATCTTCACCATGATTGTGTTCCTCCCATCGTTCATAGGGACATCAAGGCCAACAACATTCTCATAGGTCCCGATTTTGAGCCATACATTGCTGATTTCGGGCTCGCTAAACTGGTTGATGATGGAGATTTTGCAAGATCCGCTAGCATACTGGCTGGTTCCTATGGCTACATTGCTCCTGAATATGGATACATGATGAAGATAACAGAGAAAAGTGACGTGTATAGTTATGGGATTGTTGTATTAGAAGTGCTGACAGGGAAGCAACCGATTGACCCAACAATACCAGATGGGCTCCACATTGTTGACTGGGTCAGACAGAAAAGAGGAGGGAGTGAAGTGCTGGACCGAAGCCTGTGTGCAAGGCCTGAACCTGAAATAGAAGAAATATTGCAGACTTTGGGGGTGGCTTTGTTGTGTGTGAACCCTAGCCCAGGAGACAGGCCAACCATGAAAGATGTAGCCGCAATGCTTAAAGAGATCAGGCAAGAAAGGGAGGAATATATGAAAGTTGATGTGCTTCTTCACGGATCTTCTGCAAATGAACAAGATAATCATTCAAGTGAAGAGCCAAGAGGGAATGTGATGAAGCAATCATACCCGATAAACAGCAACAACACTAGTTTTTCTGCCTCTCTTCTCTTCTCTCCTTCGTCCTCTAATACCAAAGTCACATTCAAATAG 3459 0.4258 MPPRPRRFLSNHNNHHQMPRHQSFSLLHLPFFNLLFLLLHHVSSASNNEAQVLFSWLHLSSSSVPPSSFSDWNPSNPNPCNWSFIKCSPQNFVTEINIQATELKLPFPPNISSLPFLQKLVISGSNLSGLISPDIGNCPELTTIDLNSNNLAGIIPSSIGKLKNLRDLSLNSNQLSGEIPKELGDCVSLKNLNIFDNNLSGALPAELGNLSNLEVIRAGGNNGIMGNIPDALGDCMNLTILGLADTKISGSLPASLGKLRLLQTISIYNTMLSGEIPPEIGNCSELLNLFLYENELFGSLPKELGKLQKLEKMLLWQNKFSGSIPPEIGSCRNLKILDVSLNSLSGTIPTTFGNLSNLGELMLSNNNLSGSIPPVLSNLSELIQLQIDTNQISGSIPAELGELKKLTVFFAWQNKLKGIIPSELGGCASLEALDLSYNALTDSLPPSLFQLQNLTKLLLISNHLSGPIPHEIGNCSSLIRLRLLNNRIGGEIPRELGFLNNLNFLDLSENNLTGLVPIELGNCKELQMLNLSNNSLSGVLPSSLSSLTRLEVLDVSLNHFSGEIPTSIGQLTSLIRLILDRNSFSGSIPSSVGLCSSLQLLDLSSNNLSGSIPSELFDIEALDIALNLSHNALSGVIPPQISSLNKLSALDLSHNKLEGDLVALSGLENLVSLNISFNMFTGYLPDIKLFHQLSPTDLEGNQGLCPSGRDSCFISNSAMTKMQNNSDSKRAERIKLGIGLLSAFTIAMAVFGILTVLRAKKMAQEDNDSEMGGDSWPWQFSPFQKLNFSIDQVLKCLVDSNVIGKGCSGVVYRAEQENGDVIAVKKLWPTTMAARYDCQQNDKLAVHGGGVRDSFSAEVKTLGSIRHKNIVRFLGCCWNRSTRLLMYDYMPNGSLGSLLHERSGGNCLEWDIRYRILLGAAQGLAYLHHDCVPPIVHRDIKANNILIGPDFEPYIADFGLAKLVDDGDFARSASILAGSYGYIAPEYGYMMKITEKSDVYSYGIVVLEVLTGKQPIDPTIPDGLHIVDWVRQKRGGSEVLDRSLCARPEPEIEEILQTLGVALLCVNPSPGDRPTMKDVAAMLKEIRQEREEYMKVDVLLHGSSANEQDNHSSEEPRGNVMKQSYPINSNNTSFSASLLFSPSSSNTKVTFK 1152
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele42g0026 1152 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 890 1101 - -
Lele42g0026 1152 ProSiteProfiles Leucine-rich repeat profile. 646 668 IPR001611 GO:0005515
Lele42g0026 1152 ProSitePatterns Protein kinases ATP-binding region signature. 803 826 IPR017441 GO:0005524
Lele42g0026 1152 Gene3D Ribonuclease Inhibitor 46 205 IPR032675 -
Lele42g0026 1152 FunFam Predicted protein 204 302 - -
Lele42g0026 1152 Coils Coil 1076 1096 - -
Lele42g0026 1152 Gene3D Ribonuclease Inhibitor 412 715 IPR032675 -
Lele42g0026 1152 Pfam Protein kinase domain 800 1079 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele42g0026 1152 ProSitePatterns Serine/Threonine protein kinases active-site signature. 935 947 IPR008271 GO:0004672|GO:0006468
Lele42g0026 1152 PRINTS Leucine-rich repeat signature 644 657 - -
Lele42g0026 1152 PRINTS Leucine-rich repeat signature 502 515 - -
Lele42g0026 1152 FunFam probable LRR receptor-like serine/threonine-protein kinase At1g34110 780 889 - -
Lele42g0026 1152 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 485 1088 - -
Lele42g0026 1152 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 303 411 - -
Lele42g0026 1152 Gene3D Phosphorylase Kinase; domain 1 782 889 - -
Lele42g0026 1152 Gene3D Ribonuclease Inhibitor 206 406 IPR032675 -
Lele42g0026 1152 SUPERFAMILY RNI-like 296 677 - -
Lele42g0026 1152 SUPERFAMILY Protein kinase-like (PK-like) 781 1083 IPR011009 -
Lele42g0026 1152 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 429 716 - -
Lele42g0026 1152 SMART serkin_6 797 1057 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele42g0026 1152 Pfam Leucine rich repeat 626 679 IPR001611 GO:0005515
Lele42g0026 1152 Pfam Leucine rich repeat 406 464 IPR001611 GO:0005515
Lele42g0026 1152 Pfam Leucine rich repeat 139 199 IPR001611 GO:0005515
Lele42g0026 1152 Pfam Leucine rich repeat 501 560 IPR001611 GO:0005515
Lele42g0026 1152 Pfam Leucine rich repeat 332 392 IPR001611 GO:0005515
Lele42g0026 1152 ProSiteProfiles Protein kinase domain profile. 797 1094 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele42g0026 1152 SUPERFAMILY L domain-like 47 322 - -
Lele42g0026 1152 MobiDBLite consensus disorder prediction 1102 1127 - -
Lele42g0026 1152 FunFam Nuclear pore complex protein NUP107 46 203 - -
Lele42g0026 1152 Gene3D Transferase(Phosphotransferase) domain 1 890 1106 - -
Lele42g0026 1152 SMART LRR_typ_2 595 619 IPR003591 -
Lele42g0026 1152 SMART LRR_typ_2 355 379 IPR003591 -
Lele42g0026 1152 SMART LRR_typ_2 162 186 IPR003591 -
Lele42g0026 1152 SMART LRR_typ_2 499 522 IPR003591 -
Lele42g0026 1152 SMART LRR_typ_2 307 331 IPR003591 -
Lele42g0026 1152 SMART LRR_typ_2 427 451 IPR003591 -
Lele42g0026 1152 SMART LRR_typ_2 547 571 IPR003591 -
Lele42g0026 1152 SMART LRR_typ_2 523 546 IPR003591 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele42g0026 Lele-ChrLele42 196753 200290 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele42g0026 47 1137 Receptor kinase-like Gene Family AT5G56040 47.016 0.0 942
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Lele42g0026 Pkinase 7.4e-38 CL0016