Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Lele42g0024 ATGCAGATCTCTGTTCCTGTCCAATTCTTCGCCCTCACCTCTCTGCTTCTGGCCCTGCTTTCACCTCCCGCCAACGCCTTCCATGCCAAGAGGTTCAATGATTCTTCCAATGAGCATGCAGTAACAAATCCTGAGGAGATAGCCTCTATGGTTGATATGAGTATACGCAATCATACGGAAAGAAGGAATTTGGGATTCTTCACTTGTGGGACAGGGAATCCCATCGACGACTGCTGGCGCTGTGACCGCAACTGGCAGCGCCACCGTAAACGCCTAGCCAATTGCGGCATTGGGTTCGGACGCAACGCCATCGGAGGCCGAGATGGAAAGTATTACGTCGTGACTGACCCAAACGACGACGGCCCCGTCAACCCAAAACCCGGCACCCTCCGCCACGCCGTCATCCAAGACGGACCCTTATGGATTGTGTGCAGACACGGGTATTTCCACGTGGTAAACAATGACTACACCCACTGGGAAATGTATGCAATTGGTGGCAGTGCTAATCCCACCATTAATAGCCAGGGAAATCGATACCTTGCCCCTCTGAACGCTTTTGCTAAGGAGGTGACAAAGAGAGTAGACACAGATTCAGGAGTATGGAAAAGTTGGAATTGGAGGTCAGAGGGAGACCTTTTGCTGAACGGTGCCTTCTTCACTGCATCAGGTGCTGGCTCTGGAGCAAGCTATGCCAGAGCTTCAAGTTTATCCGCCAAATCATCTTCTTTGGTTGGTACCATCACCTCCGGTGCCGGTGTTCTTAGCTGCCGGAAGGGTTCTATGTGTTAA 789 0.5171 MQISVPVQFFALTSLLLALLSPPANAFHAKRFNDSSNEHAVTNPEEIASMVDMSIRNHTERRNLGFFTCGTGNPIDDCWRCDRNWQRHRKRLANCGIGFGRNAIGGRDGKYYVVTDPNDDGPVNPKPGTLRHAVIQDGPLWIVCRHGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRYLAPLNAFAKEVTKRVDTDSGVWKSWNWRSEGDLLLNGAFFTASGAGSGASYARASSLSAKSSSLVGTITSGAGVLSCRKGSMC 262
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Lele42g0024 262 SUPERFAMILY Pectin lyase-like 49 143 IPR011050 -
Lele42g0024 262 Gene3D - 72 144 IPR012334 -
Lele42g0024 262 Gene3D - 145 255 IPR012334 -
Lele42g0024 262 SMART amb_all 34 185 IPR002022 -
Lele42g0024 262 PRINTS Pollen allergen Amb family signature 95 112 IPR018082 -
Lele42g0024 262 PRINTS Pollen allergen Amb family signature 119 144 IPR018082 -
Lele42g0024 262 PANTHER PECTATE LYASE 18-RELATED 144 260 IPR045032 GO:0030570
Lele42g0024 262 SUPERFAMILY Pectin lyase-like 143 256 IPR011050 -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Lele42g0024 Lele-ChrLele42 184389 187860 Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele42g0024 144 262 Polysaccharide Lyase AT5G48900 78.992 1.21e-50 169