Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele42g0022 ATGGTTGGTGGTACTTTGATTAATGATAAAAAAATATCTCCAATGTGTTATGGCCCAGCTGAGAATGCTCATGTTGCTAAATATAGGATGGTGTTGGAACGATCTCCATTCTCATTGGATCAGAAAAAGTGGTATAATGTGGAGAGGGAGAATCTTGCTAAGGGAATAAAGCAACAATTTCAAGAACTGATGCTTCAAATGTCAATAAATCAAGACAAGTGGTTAAATTGTGAAGATCCCCTGATCAATCATATCCCATGGACCTGTGAGGAGGACAAGTTACTGTTCCACATAATCCAAGAGATTGGCAATAGGAACTGGTTTAAACTTGCCGCATCACTAAACACAAATAGGTCCCCATTTCAATGCTTGGCACGATACCATAGGGGTTTAAATCCTTCCATGCTAAATAGCGAATGGACTGAGGAAGAAGATGCTCAACTTCATTCTGCTGTTGCAATTTTTTATGTGAGCAATTGGCAGTCTGTAGCTTCTGTTTTAGAGCGGAGGACTGGAACTCAATGCTCTAATAGGTTGGTCACCTATGTTATGAGTTATTTTATGACTTCACATATGCATACAAGTTTTCCATGGAAGTATGCCACTCAAAATGTAACGACTTGCATTTTATTTCTTGCATACCCTTCATTTACTGATATGCTGGTAGTTGATGGAGGAATTTACAGCACATTTCGTCTAGGAAATGTTATTAGCTCCTAA 720 0.3861 MVGGTLINDKKISPMCYGPAENAHVAKYRMVLERSPFSLDQKKWYNVERENLAKGIKQQFQELMLQMSINQDKWLNCEDPLINHIPWTCEEDKLLFHIIQEIGNRNWFKLAASLNTNRSPFQCLARYHRGLNPSMLNSEWTEEEDAQLHSAVAIFYVSNWQSVASVLERRTGTQCSNRLVTYVMSYFMTSHMHTSFPWKYATQNVTTCILFLAYPSFTDMLVVDGGIYSTFRLGNVISS 239
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele42g0022 239 CDD SANT 139 183 IPR001005 -
Lele42g0022 239 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 140 183 IPR017930 -
Lele42g0022 239 PANTHER SNRNA-ACTIVATING PROTEIN COMPLEX SUBUNIT 4 13 69 - -
Lele42g0022 239 ProSiteProfiles Myb-like domain profile. 132 183 IPR001005 -
Lele42g0022 239 Gene3D - 85 133 - -
Lele42g0022 239 SMART sant 136 185 IPR001005 -
Lele42g0022 239 SMART sant 83 133 IPR001005 -
Lele42g0022 239 SUPERFAMILY Homeodomain-like 72 128 IPR009057 -
Lele42g0022 239 CDD SANT 86 129 IPR001005 -
Lele42g0022 239 ProSiteProfiles Myb-like domain profile. 79 131 IPR001005 -
Lele42g0022 239 SUPERFAMILY Homeodomain-like 114 182 IPR009057 -
Lele42g0022 239 Gene3D - 134 183 - -
Lele42g0022 239 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 79 135 IPR017930 -
Lele42g0022 239 Pfam Myb-like DNA-binding domain 87 148 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele42g0022 Lele-ChrLele42 159968 161545 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele42g0022 8 178 MYB-Related Transcription Factor Family AT3G18100 43.694 3.52e-56 188
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lele42g0022 Myb_DNA-bind_6 3e-14 CL0123