Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele42g0007 ATGAGTTGCTTTCCTTGTTTTTCATGCAACGACAAGAAAACTGCACAGAAGAAGCCGAAACAAGGAATTAGGGCTCAAACGCAACCATGCCAACCTCAAAAAGAAGCCCTACTTCCTCAGCCCCGCCCTGAGAATAATTATTGTTCAAAGCCAACTGATAGGGGGAGACCAAATAATAATAGTAATGCAAGGAAAGATGGCGGCAACAATAACATCGCGGCCGAAACTTTCACCTTTCGAGAATTGGCCGCCGCCACAAGGAACTTTCGGCGAGATTGCCTCATTGGGGAAGGTGGTTTTGGAAGAGTTTATAAGGGAAAACTCGATAAAACCAACCAGATTGTAGCTGTGAAGCAGCTCGACAGAAATGGATTGCAAGGGAATAGAGAGTTCCTCGTTGAAGTGTTGATGTTAAGCCTCTTACACCATGAAAATCTGGTGAATCTTATTGGATATTGCGCGGATGGAGATCAAAGATTATTGGTGTACGAGTACATGCCTCTGGGATCTGTAGAAGACCATCTTCTGGATCTAGAACCCCACGAGAGGCCATTGGATTGGGGTGTGAGAATGAAAATAGCTTTGGGAGCATCGAAAGGACTAGAATATTTGCACGACAGGGCGAATCCTCCGGTAATATACCGAGACCTGAAGGCATCAAATATATTGCTGGACAAGGGGTTTCATGCGAAGCTGTCGGATTTTGGATTGGCCAAGCTCGGACCCACAGGAGACAAGTCTCATGTCTCCTCCCGAATCATGGGAACCTATGGTTACTGTGCTCCTGAGTATCAAAGAACTGGTCAGCTCACCGTCAAATCTGATGTCTACAGTTACGGTGTCGTTTTACTGGAACTCCTCACCGGAAAGCGAGTCATTGACAACACCAGACCCACCCGCCAGCAAAATCTTGTTTCTTGGGCACGACCCATATTCAAGGATCCTAATAGATACCTAGAGCTCGCCGATCCCCTTCTTCAAAGAAACTTCCCCGTCAGAGCTTTCAACCAAGCAGTGGCCGTGGCCGCCATGTGCCTTAACGACGAACCCTCCGCCCGGCCTTTGATCAGCGACGTTGTCACCGCCCTTACTTTTCTCGGCACAGACACCGAAGCCGACCCCGACATCATAATTCCCCCGTCGTCACCACCGCAACAACATTCCCAACTTCTTCCTAATGACGCCGTTGCCGAACGTCAACGAGCGGTTGCTGAAGCCATAAAATGGGGTTCAGCTTCTAGGAATAATGCTGTACACAGATCAAATGCAAATGCCTTCTCTTTGTAA 1287 0.4802 MSCFPCFSCNDKKTAQKKPKQGIRAQTQPCQPQKEALLPQPRPENNYCSKPTDRGRPNNNSNARKDGGNNNIAAETFTFRELAAATRNFRRDCLIGEGGFGRVYKGKLDKTNQIVAVKQLDRNGLQGNREFLVEVLMLSLLHHENLVNLIGYCADGDQRLLVYEYMPLGSVEDHLLDLEPHERPLDWGVRMKIALGASKGLEYLHDRANPPVIYRDLKASNILLDKGFHAKLSDFGLAKLGPTGDKSHVSSRIMGTYGYCAPEYQRTGQLTVKSDVYSYGVVLLELLTGKRVIDNTRPTRQQNLVSWARPIFKDPNRYLELADPLLQRNFPVRAFNQAVAVAAMCLNDEPSARPLISDVVTALTFLGTDTEADPDIIIPPSSPPQQHSQLLPNDAVAERQRAVAEAIKWGSASRNNAVHRSNANAFSL 428
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele42g0007 428 MobiDBLite consensus disorder prediction 20 34 - -
Lele42g0007 428 CDD STKc_IRAK 95 364 - -
Lele42g0007 428 FunFam Serine/threonine-protein kinase PBS1 62 165 - -
Lele42g0007 428 MobiDBLite consensus disorder prediction 45 70 - -
Lele42g0007 428 PANTHER OS07G0668900 PROTEIN 6 374 - -
Lele42g0007 428 ProSitePatterns Protein kinases ATP-binding region signature. 95 118 IPR017441 GO:0005524
Lele42g0007 428 ProSitePatterns Serine/Threonine protein kinases active-site signature. 212 224 IPR008271 GO:0004672|GO:0006468
Lele42g0007 428 Gene3D Phosphorylase Kinase; domain 1 60 165 - -
Lele42g0007 428 Gene3D Transferase(Phosphotransferase) domain 1 166 375 - -
Lele42g0007 428 FunFam Serine/threonine-protein kinase PBS1 166 377 - -
Lele42g0007 428 ProSiteProfiles Protein kinase domain profile. 89 366 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele42g0007 428 SUPERFAMILY Protein kinase-like (PK-like) 75 390 IPR011009 -
Lele42g0007 428 Pfam Protein kinase domain 93 360 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele42g0007 428 SMART serkin_6 89 366 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele42g0007 428 MobiDBLite consensus disorder prediction 13 70 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele42g0007 Lele-ChrLele42 67003 68634 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele42g0007 1 425 Glycoside Hydrolase AT3G07070 64.486 0.0 541
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-1 Lele42g0007 Pkinase 7.4e-48 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele42g0007 42 67003 68634 Lele43g1348 43 21537129 21538463 hybridization
Lele42g0007 42 67003 68634 Lele44g1345 44 21574795 21576418 hybridization