Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele41g1389 ATGGTGGTTGAAGATAATAATCATGACGATGGTCGTTCAACAGAGGAATGGTTGATTCAAGCACAAGAGCTTGTCCCTCTTGCCCTTGAGAAGTCCAAGGAGGTGAAGAATTTCCCAGGAAGGTGGAAGATGATCATATCAAAACTCGAACAGATCCCTGGTCGTTTATCAGACTTATCTAGCCATCCGTGCTTCTCCAAGAACGCTCTCTGCAAGGAGCATTTGCACGCTGTATCATCAATACTCAGAGAAGCCACTCATTTGGCTGATCTTTGCGTGAAGGAGAAGTACGAAGGCAAGCTCAAGATGCAGAGTGATCTCGATGCTTTATCAGGAAAACTCGATTTGCACCTGAAAGATTGCAGCCTGTTAATCAAAACTGGAGTTCTTGGGGAGGCCACCTTGCCATTAGCAATATCATCAGAAGCTGATGTTTCGAGCAGTATGAGGGAGTTACTGGCTCGCCTGCAGATCGGCCACTTGGAGGCGAAACACAGGGCTATAGAGAAACTACACGATGTGATGAAAGAAGATGACAAGAGTATTTTAGGTGTTTTAACACGTAGCAACATAGCTGCTTTAGTTCAATTGCTCATTGCTACTTCTTCAAGGATAAGAGAGAAAACTGTTGCCATTATATGCAGTCTTGCAGAATCAGAAAGCTGTGAGAATTGGTTAGTTTCTGAAGGTTTGATTCCACCTCTGATAAGGCTCATCGAATCGGGAAGTACCCTCGTGAAAGAGAAGGCCACCATAACCTTTCAGAGGCTCTCCATGTCATCAGAAACTGCTCGTGCCATTGTTGGACACGGTGGGGTGCGTCCACTCATTGATCTCTGTATTACTGGCGATTCTGTGTCCCAGGCTGCTTGTGCTTGTACTTTGAAGAACATATCTGCTGTCCCCGAGGTTCGACAAGTTCTAGCCGAGGAAGGGATTGTTAAGGTAATGATCAGTCTCCTAAACTGTGGCATGTTGTTGAATTCCAAGGACTATGCAGCTGAGTGCCTACAGAATCTCACCTCAAGCAATGAGAAGCTAAGAAGGCTTGTCATATCAGAAAATGGAATAAGAAGCCTTTTAGCTTATTTAGACGTTCCTCTTCCACAAGAATCTTCGATGGGAGCCCTGAGGAACTTAGTAGGATCGGTCTCTGAGCAATCTCTAGTTTCTATGGGTCTACTCCCTCGCCTGGCTCATGTCCTAAAATCTGGGTCTATCGGGGCCCAGCAAGCGGCTGCTTCTACAATATGTAAAATTTGCAGCTCAGGAGAGATGAAGAAGATGATTGGTGAGGCTGGGTGTGTGCCTCTGCTGGTGAAAATGCTGGAGGTTAAGTCTAATGGTGCTAGAGAGGTGGCTGCACAGGCGATTTCGAGCTTGATGATGCAGTCTCAGAATCGAAGAGAGGTGAAGAAGAACGACAAGAGCGTGCCTAATCTTGTTCAGTTGCTTGATCCGAATCCTCAAAATACTGCGAAGAAATATGCAGCGGCATGCCTTGGATCGCTTTCTTCGAGTCAAAAGTGTAGGAAACTGATGATCTCCTACGGAGCGATCGGGTATCTGAAGAAGCTGAGTGAGATGGAGATTCCGGGAGCGAAGAAGCTACTTGAGAGATTGGAAAGAGGGAAATTAAGGAGCTTGTTTAGCAGGAAATAG 1662 0.4591 MVVEDNNHDDGRSTEEWLIQAQELVPLALEKSKEVKNFPGRWKMIISKLEQIPGRLSDLSSHPCFSKNALCKEHLHAVSSILREATHLADLCVKEKYEGKLKMQSDLDALSGKLDLHLKDCSLLIKTGVLGEATLPLAISSEADVSSSMRELLARLQIGHLEAKHRAIEKLHDVMKEDDKSILGVLTRSNIAALVQLLIATSSRIREKTVAIICSLAESESCENWLVSEGLIPPLIRLIESGSTLVKEKATITFQRLSMSSETARAIVGHGGVRPLIDLCITGDSVSQAACACTLKNISAVPEVRQVLAEEGIVKVMISLLNCGMLLNSKDYAAECLQNLTSSNEKLRRLVISENGIRSLLAYLDVPLPQESSMGALRNLVGSVSEQSLVSMGLLPRLAHVLKSGSIGAQQAAASTICKICSSGEMKKMIGEAGCVPLLVKMLEVKSNGAREVAAQAISSLMMQSQNRREVKKNDKSVPNLVQLLDPNPQNTAKKYAAACLGSLSSSQKCRKLMISYGAIGYLKKLSEMEIPGAKKLLERLERGKLRSLFSRK 553
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele41g1389 553 PANTHER ARM REPEAT SUPERFAMILY PROTEIN 6 551 - -
Lele41g1389 553 Pfam Armadillo/beta-catenin-like repeat 261 300 IPR000225 GO:0005515
Lele41g1389 553 Pfam Armadillo/beta-catenin-like repeat 425 461 IPR000225 GO:0005515
Lele41g1389 553 Gene3D - 448 537 IPR011989 -
Lele41g1389 553 Gene3D - 269 370 IPR011989 -
Lele41g1389 553 Gene3D - 371 447 IPR011989 -
Lele41g1389 553 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 230 272 IPR000225 GO:0005515
Lele41g1389 553 SMART arm_5 464 506 IPR000225 GO:0005515
Lele41g1389 553 SMART arm_5 383 422 IPR000225 GO:0005515
Lele41g1389 553 SMART arm_5 301 342 IPR000225 GO:0005515
Lele41g1389 553 SMART arm_5 260 300 IPR000225 GO:0005515
Lele41g1389 553 SMART arm_5 219 259 IPR000225 GO:0005515
Lele41g1389 553 SMART arm_5 344 382 IPR000225 GO:0005515
Lele41g1389 553 SMART arm_5 423 463 IPR000225 GO:0005515
Lele41g1389 553 SMART arm_5 178 218 IPR000225 GO:0005515
Lele41g1389 553 Gene3D - 149 268 IPR011989 -
Lele41g1389 553 SUPERFAMILY ARM repeat 149 512 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele41g1389 Lele-ChrLele41 22183736 22185397 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele41g1389 204 536 U-box Gene Family AT2G23140 21.257 1.26e-06 49.3