LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lele41g1387	ATGGCAGGAGTCGGAGCTAAGAAATCTGCTTCTGCAACGCCGTCGCCTTCGTCAAATGCACAACCCAACAACAAGGCCACCATTATCAAACGGTTCATAGGGGTTCGCCAGAGGCCGTCGGGACGATGGGTCGCCGAGATCAAGGACTCGTCTCAGCATGTCCGGCTTTGGCTCGGAACCTATGACACCCCTGAGGAGGCTGCCCAAGCCTACGACGAGGCAGCCCGCGCCCTCCGTGGCGACAACGCCCGAACCAACTTTGTCTCCTTCGCCGCCAACGAAGGCCTATCGAAGCAGAGTGGACTGAGTTTTGCTTCTTTGAAAGCCAAGCTGAGCAGGAATCTTCAGAGCATAATGGCTAGGGCAAGCGATGGCAGAAGCAGTAATAAAGCATCCAATAGCAGGGTAACTGACCATTTTACCCTTGCCAGCATATTCCACAGAAGGACTAAATCTAACTACGGAGAGTACAAGTTCAACCAGATCCCTAATGCTAATGATATGGCGGAGAACGTGGTGCAGCCTAGTATAATAGTGCCGCCCGTAGGGGATCAACCGGGTGCAGTTAGTTCCTGCTGGGAGAGCTCAAGCGTGTCAGATTGTAGCTCCGAGTGGGTCGGGTTCCGGCAACATGGTTTGGACTCGGACGGATCAGATGCGGGCGGGGAGCAATTAGGGCTTAATCTGGAGCAGCTGTTGGGATGGGAGCATAGTCCGGATCATGGTAATAGTGTGTATGGGAGTAGGTTAATAAACGGAAGCGATGAACAAGATGAAGGATCAAGGAGCAAGAGGTTTAAGGTATCTTCAACGGTTCTTGTGCCTCCAACTTTCAGTGGGTCTCCAAATAACAACGATTTCTGTTTCCTTCGTTCGTGTTTTCATTTTGCAATTTCTACTAGCGTGCCTAGGGTTTCATTCGTCGAGGCTTCAAAGCGAAGGATTTTCTAA	951	0.5131	MAGVGAKKSASATPSPSSNAQPNNKATIIKRFIGVRQRPSGRWVAEIKDSSQHVRLWLGTYDTPEEAAQAYDEAARALRGDNARTNFVSFAANEGLSKQSGLSFASLKAKLSRNLQSIMARASDGRSSNKASNSRVTDHFTLASIFHRRTKSNYGEYKFNQIPNANDMAENVVQPSIIVPPVGDQPGAVSSCWESSSVSDCSSEWVGFRQHGLDSDGSDAGGEQLGLNLEQLLGWEHSPDHGNSVYGSRLINGSDEQDEGSRSKRFKVSSTVLVPPTFSGSPNNNDFCFLRSCFHFAISTSVPRVSFVEASKRRIF	316

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lele41g1387	316	MobiDBLite	consensus disorder prediction	10	25	-	-
	Lele41g1387	316	Pfam	AP2 domain	31	80	IPR001471	GO:0003700\|GO:0006355
	Lele41g1387	316	CDD	AP2	30	87	IPR001471	GO:0003700\|GO:0006355
	Lele41g1387	316	SMART	rav1_2	31	94	IPR001471	GO:0003700\|GO:0006355
	Lele41g1387	316	PANTHER	SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR	9	180	-	-
	Lele41g1387	316	ProSiteProfiles	AP2/ERF domain profile.	31	88	IPR001471	GO:0003700\|GO:0006355
	Lele41g1387	316	PRINTS	Ethylene responsive element binding protein signature	54	70	IPR001471	GO:0003700\|GO:0006355
	Lele41g1387	316	PRINTS	Ethylene responsive element binding protein signature	32	43	IPR001471	GO:0003700\|GO:0006355
	Lele41g1387	316	MobiDBLite	consensus disorder prediction	1	25	-	-
	Lele41g1387	316	Gene3D	AP2/ERF domain	30	89	IPR036955	GO:0003700\|GO:0006355
	Lele41g1387	316	SUPERFAMILY	DNA-binding domain	31	87	IPR016177	GO:0003677
	Lele41g1387	316	FunFam	ethylene-responsive transcription factor RAP2-11	30	89	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lele41g1387	Lele-ChrLele41	22169568	22171741	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lele41g1387	31	97	AP2-EREBP Transcription Factor Family	AT5G19790	66.176	8.45e-25	99.0

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	AP2/ERF-ERF	Lele41g1387		AP2	6.6e-15	CL0081