Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele41g1378 ATGGGGGCGGGAGGAAATTTCTGGGATTTGCTAAAGCCATATGCGCGAGCCGAAGGTTTCGATTTCTTAAGGGACAAGCGAGTCGCTGTGGACCTCTCCTTCTGGATTATCCAGCACCAGACTGCTATCAGGGCCAATGCTCGGAAACCCCATCTACGCCTTACCTTCTTCCGTACCATCAATCTCTTCTCCAAGTTTGGAGCATATCCAGTCTTCGTGGTAGATGGGACCCCATCGCCTTTGAAATCACAAGCTAGGATTTCAAGATTTTTCCGTTTTTCTGGCATTGAACTACCAAATTTTCCGGTGGCTGAAGAAAGTGTTCCCGTTGAGAGGAACCGTGAATTTTCTAAAAGTGTTCAGGAATGTGTGGAACTTGTGGAGTTACTTGGAATGCCTGTACTATATGCTAAAGGAGAGGCAGAAGCACTCTGTGCCCAATTAAATAGTGAAGGTCATGTAGATGCATGCATCACATCTGACAGTGATGCATTCCTATTTGGCGCGAAATGCATTATAAAAAGCTTCTGCTCTAATGCCAAAGAAGCTTTTGAATGCTACAATATGGAAGATATTGAAGCTGGCCTTGGGTTGAAGAGGAAACACCTCATAGCTATTTCTCTTCTGGTTGGAAATGATCATGATTTAACAGGTGTTCAGGGGATTGGGCTTGATACAGCTCTTCGTTTTGTTAGATGTTTTAGTGAAGAAGATGTATTGAATAGGTTGCAAGAGATTGGCAATGGGAAAGTTTCAACAGCTCCCACCAGCATTGAACCTGCTGAAAATTGTGATGACATTGATGGGAACTTTGCAATCCGAAAACAACTTCATTGTTCCTTTTGTGGGCATCCAGGTAGCAAAAAAGATCATATGAAAACTTATTGTGAATTTTGTATTACAGATGATGATGAAGGTTGCTTGAGAAAACCAGAGGGTTTTACTTGTGGTTGCCCTTCCTGTGATATGATTAGGAAACGGAAGGGGCGGAGAAGAATGGAAAATTGGTACACAAAAATTTGTCTCAAGATTGCAGAGGAGCTCAATTTTCCCAGAGATGAAATCATTGAAATGTATTTATGCAATGACAATGTTTGCCATCCTGCAAGTGATGGTCCTTGCATTTCATGGGGTACACCCAAGATTGAAATGCTGATAGATTTTTTAATCTTCCATCAGCATTGGGATCCATCTTACGTTCGACAGCAGATTTTTCCTATGATGTCTACCATCTTTTTGAGAGACATGGCCAATACTCCTGTAGAAAGTCTGGTGTTTGGGACATTTGGGTTTGATTCAATACAACGTGTGAAGATAAGATATAGATATCAATTTTATGTTGTCAAGTGGAAATGTGCAGTTGGCAACATTAGTTGTACAGTTCCATCACATGAATCTAGCATGCAACAAGCAGATGGTAGTGAGCTTGATGAATTTGTGGATCTACTAGATGATTCTAGTGTTTCTGATATGGGTGACGGGTGTAGCTTCCTGGTGACGGATGAAAATATGGATCTTGTGAGGGCTGCTTTTCCAGCAAAAGTTGAAAGGTTTTGGCAAGAGCAGGAATTGAAGGGATCGAAAAGAAGAAAGACTTCTACCCCACGATCTCTAGAGAAAGAGAATTCATCATCATCAAACACAAGGAGTATTCAACAGAGCAGCATTACAAAGTTCTTCCGCTCTGCGAAAACTCAGCATCATTCAAAACAGGAAGTGGCATCTGATGATAACCTTGACAGTGGGAAAAGACCAATGTCCAGTCCAAATCTTACAAAATCAGCAAGGCGTCGCCTTTTATTTAAGTAG 1809 0.4157 MGAGGNFWDLLKPYARAEGFDFLRDKRVAVDLSFWIIQHQTAIRANARKPHLRLTFFRTINLFSKFGAYPVFVVDGTPSPLKSQARISRFFRFSGIELPNFPVAEESVPVERNREFSKSVQECVELVELLGMPVLYAKGEAEALCAQLNSEGHVDACITSDSDAFLFGAKCIIKSFCSNAKEAFECYNMEDIEAGLGLKRKHLIAISLLVGNDHDLTGVQGIGLDTALRFVRCFSEEDVLNRLQEIGNGKVSTAPTSIEPAENCDDIDGNFAIRKQLHCSFCGHPGSKKDHMKTYCEFCITDDDEGCLRKPEGFTCGCPSCDMIRKRKGRRRMENWYTKICLKIAEELNFPRDEIIEMYLCNDNVCHPASDGPCISWGTPKIEMLIDFLIFHQHWDPSYVRQQIFPMMSTIFLRDMANTPVESLVFGTFGFDSIQRVKIRYRYQFYVVKWKCAVGNISCTVPSHESSMQQADGSELDEFVDLLDDSSVSDMGDGCSFLVTDENMDLVRAAFPAKVERFWQEQELKGSKRRKTSTPRSLEKENSSSSNTRSIQQSSITKFFRSAKTQHHSKQEVASDDNLDSGKRPMSSPNLTKSARRRLLFK 602
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele41g1378 602 SMART xpgn3 1 96 IPR006085 GO:0004518
Lele41g1378 602 Gene3D - 198 263 - -
Lele41g1378 602 SUPERFAMILY PIN domain-like 6 213 IPR029060 -
Lele41g1378 602 Gene3D - 5 197 - -
Lele41g1378 602 FunFam Flap endonuclease GEN-like 1 2 197 - -
Lele41g1378 602 FunFam Flap endonuclease GEN-like 1 198 256 - -
Lele41g1378 602 MobiDBLite consensus disorder prediction 538 562 - -
Lele41g1378 602 CDD PIN_GEN1 5 202 - -
Lele41g1378 602 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 25 39 IPR006084 -
Lele41g1378 602 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 203 218 IPR006084 -
Lele41g1378 602 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 127 144 IPR006084 -
Lele41g1378 602 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 70 89 IPR006084 -
Lele41g1378 602 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 148 168 IPR006084 -
Lele41g1378 602 PANTHER FLAP ENDONUCLEASE FAMILY MEMBER 8 546 IPR006084 -
Lele41g1378 602 SMART xpgineu 128 198 IPR006086 GO:0004518
Lele41g1378 602 Pfam XPG I-region 131 213 IPR006086 GO:0004518
Lele41g1378 602 SUPERFAMILY 5' to 3' exonuclease, C-terminal subdomain 198 414 IPR036279 -
Lele41g1378 602 MobiDBLite consensus disorder prediction 565 579 - -
Lele41g1378 602 MobiDBLite consensus disorder prediction 524 602 - -
Lele41g1378 602 Pfam XPG N-terminal domain 7 86 IPR006085 GO:0004518
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele41g1378 Lele-ChrLele41 22125494 22131412 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele41g1378 16 245 Core DNA Replication Machinery Family AT5G26680 28.685 2.27e-15 76.6