Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele41g1364 ATGGGCAGAGGGAGGGTTGAACTGAAGAGGATAGAGAACAAAATCAACAGGCAAGTGACTTTCTCAAAAAGAAGGAGCGGCCTCATGAAGAAAGCTTATGAACTGTCAGTGCTTTGTGATGCTGAGGTTGCTCTTATCATTTTCTCTGGTCGTGGCAAGCTCTACGAATTCGGAAGTGCTGGCATTACCAAAACCCTGGAACGATACCAGAGGTGCACTTTTACTTCTCAAGACACCAATGGTCTCGAGCTTGAAACCCAGAGCTGGTGCCAAGAGGTGTCAAAGCTAAAGGCAAAGTATGAGTCTCTTCAGAGGACTCAAAGGCATTTGCTTGGGGAAGATCTGGGACCACTGAATGTGAAAGAGCTTCAGAATCTAGAGAAGCAGCTGGAAGGAGCTCTAGCTCAAGCCAGGCAAAGGAAGACAGAGATCATAATGGAACAAATGGAAGATCTACGCAGGAAGGAACGGCATCTGGTAGACATGAATCAGCAACTGAGACTGAAGGTGGAGGCAGAGGGATATAATGTGAAGAACATAGAGAGCTTATGGAGCAGTCATTGTGAGTCATCAGCTGCAGCTGCCTTCCAACCTCCCCATAACCCATTCCTCCATGTCGGGTACCATCATCATCCGTATGTTGAAGCAGAGACATCTGATCATAATGCATCCAAGCCCAATAACATGCTTGCTGAAACCAACTTCATGCAGGGCTGGCTTCTTTGA 726 0.4697 MGRGRVELKRIENKINRQVTFSKRRSGLMKKAYELSVLCDAEVALIIFSGRGKLYEFGSAGITKTLERYQRCTFTSQDTNGLELETQSWCQEVSKLKAKYESLQRTQRHLLGEDLGPLNVKELQNLEKQLEGALAQARQRKTEIIMEQMEDLRRKERHLVDMNQQLRLKVEAEGYNVKNIESLWSSHCESSAAAAFQPPHNPFLHVGYHHHPYVEAETSDHNASKPNNMLAETNFMQGWLL 241
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele41g1364 241 Coils Coil 120 143 - -
Lele41g1364 241 ProSiteProfiles K-box domain profile. 86 176 IPR002487 GO:0003700|GO:0005634|GO:0006355
Lele41g1364 241 FunFam MADS-box transcription factor 1 13 88 - -
Lele41g1364 241 Gene3D - 13 81 IPR036879 GO:0003677|GO:0046983
Lele41g1364 241 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Lele41g1364 241 Coils Coil 145 169 - -
Lele41g1364 241 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Lele41g1364 241 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Lele41g1364 241 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Lele41g1364 241 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Lele41g1364 241 SUPERFAMILY SRF-like 2 89 IPR036879 GO:0003677|GO:0046983
Lele41g1364 241 CDD MADS_MEF2_like 2 73 IPR033896 GO:0000977|GO:0045944
Lele41g1364 241 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Lele41g1364 241 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 191 - -
Lele41g1364 241 Pfam K-box region 85 170 IPR002487 GO:0003700|GO:0005634|GO:0006355
Lele41g1364 241 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele41g1364 Lele-ChrLele41 22030765 22034153 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele41g1364 1 241 MADS-box Gene Family AT2G45650 60.392 1.78e-105 303
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Lele41g1364 K-box 3.9e-30 No_clan