Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele41g1348 ATGAAGAAACAGGTTTTGATGCTGTGGTGGTTTGGAATCATGACTATGCAACTCTGCTTCTTACCGGCTGCTTCTTCTGATGACAACATATCAGACAGCAGTGAGATTGCGGTTGAGCTAAATGCGGAAGATCCAAACCAAGTGGTCATTGACAATGGCATCGTCCAACTCACTCTGTCAACACCCCAAGGCTATGTTATAGGAATCTCATACCTTGGAATCCACAATATCCTAGAATCTAGTCACGCCCTAAACGACAGAGGGTATTTTGATCTAGTTTGGAATGAACCAGGAAAGAATAGTATTTCCCAAAGAATTAATGGGACGCATTGCTCAATCGTGGCATCGGACGAGAGCCAAGTGGAGGTTTCGTTTGATTTTTCAGAAATAGCCAGGATAAAGAACATGTCATCCTGGGATTTAAGCCAATACAACGTGGGTGTGGAAGAAAGTGAACTGGACTATGAAAGAATCTTGGCTCAAGCGACTAATCCTTACCAGCTTGTGTGTGCTACTAGACAACTAGTTTTGCTCTCTGCAGATCTGCAACTTCTTCACTACAAATCACAGATTCTTAGAAGTGAGACAGCCGCGAGTAGGGATTGGAAGGACATGAGCTATGACGTGTTGATGAGAATCTTCATGACTCTGAATGTGGTGGATTTCGCTTCTGTTTCCATGGTTTGCAGCTCCTGGCGACATGTTTGCCGAGACGCTTTGTTTCGAGATGGAAAAGTCTTAGATCTCACCAAGTGGAGAAATCCACGAGTTCAGCTAAGTTCAAGGACAATTGCAGTCTTGATGTCTCTTTTACATCTCACCAGCGGCCAACTTGATTGTCTCATATTCGGTTTTGTTCTCTATTTGGATGATCTCGACTTCATTAATATTGCTAAAAGGAGCCGTAATCTGAAACGGCTAGTTCTACCTGTGAGGTTCCCGGATCTGTCAAACAAGGGAATCGATGAAGCAGTGCAGCAATGGGAAGGGCTAGAATCGTTGACAATTACTAGAAACTTCCTAGCTCCTGACTTTCTGGAAGCCATAGGAAAATACTGCCAGAACTTTTCAGAACTGAAGCTGACTTGA 1089 0.4362 MKKQVLMLWWFGIMTMQLCFLPAASSDDNISDSSEIAVELNAEDPNQVVIDNGIVQLTLSTPQGYVIGISYLGIHNILESSHALNDRGYFDLVWNEPGKNSISQRINGTHCSIVASDESQVEVSFDFSEIARIKNMSSWDLSQYNVGVEESELDYERILAQATNPYQLVCATRQLVLLSADLQLLHYKSQILRSETAASRDWKDMSYDVLMRIFMTLNVVDFASVSMVCSSWRHVCRDALFRDGKVLDLTKWRNPRVQLSSRTIAVLMSLLHLTSGQLDCLIFGFVLYLDDLDFINIAKRSRNLKRLVLPVRFPDLSNKGIDEAVQQWEGLESLTITRNFLAPDFLEAIGKYCQNFSELKLT 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele41g1348 362 Gene3D Ribonuclease Inhibitor 194 362 IPR032675 -
Lele41g1348 362 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 41 126 - -
Lele41g1348 362 Pfam F-box domain 202 238 IPR001810 GO:0005515
Lele41g1348 362 Pfam Rhamnogalacturonate lyase family 30 126 IPR010325 -
Lele41g1348 362 SUPERFAMILY F-box domain 199 241 IPR036047 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele41g1348 Lele-ChrLele41 21937667 21941968 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele41g1348 36 125 Polysaccharide Lyase AT2G22620 43.333 4.89e-19 86.3