Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele41g1331 ATGGCATTCACAGGAACATTGGATAAATGCAATGCATGTGATAAGACTGTTTATGTGGTGGATCTGTTGTCTCTTGAGGGAGTTCCCTACCATAAATCTTGCTTTCGATGCAGTCACTGCAAGGGCTCCCTTTCGATGAGTAGCTACTCTTCAATGGATGGTGTTCTGTATTGCAAGCCACATTTTGAGCAGCTTTTCAAGGAATCTGGAAATTTCAGCAAGAATTTTCACACAGCAAAGTCTTCTGAAAAATCACATGACCCGAGCAAGAACTCAAACAAACTCTCTTCATTGTTCAGCGGAACACAAGACAAATGTGCAGTTTGCACTAAAACAGTCTATCCTCTAGAAAAGGTGACACTGGAAGGAGAATGCTACCACAAGACTTGCTTTAGGTGTGCTCATGCAGGGTGTCCTCTGACACATTCCTCCTATGCTGCTCTTGATGGTGTACTGTATTGCAGGCACCACTTTGCTCAGCTTTTCATGGAGAAAGGTTCTTACAACCATGTCAAGCAAGTCACTGCTCACAAAAAGAACTCTGCTTCCCCCGATGACCACCCTGAAGATGGCTCTCACCCAGATGATGAACATCCATCTCAGGACCAGGATGTAACTAAACATGGAGAAGATGAAGATGAACAATCTTGA 651 0.4378 MAFTGTLDKCNACDKTVYVVDLLSLEGVPYHKSCFRCSHCKGSLSMSSYSSMDGVLYCKPHFEQLFKESGNFSKNFHTAKSSEKSHDPSKNSNKLSSLFSGTQDKCAVCTKTVYPLEKVTLEGECYHKTCFRCAHAGCPLTHSSYAALDGVLYCRHHFAQLFMEKGSYNHVKQVTAHKKNSASPDDHPEDGSHPDDEHPSQDQDVTKHGEDEDEQS 216
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele41g1331 216 MobiDBLite consensus disorder prediction 179 216 - -
Lele41g1331 216 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 36 76 - -
Lele41g1331 216 ProSiteProfiles LIM domain profile. 8 68 IPR001781 -
Lele41g1331 216 MobiDBLite consensus disorder prediction 174 216 - -
Lele41g1331 216 PANTHER OS06G0237300 PROTEIN 6 101 IPR045268 -
Lele41g1331 216 FunFam LIM domain and actin-binding 1 100 170 - -
Lele41g1331 216 Gene3D Cysteine Rich Protein 5 72 - -
Lele41g1331 216 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 2 35 - -
Lele41g1331 216 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 132 171 - -
Lele41g1331 216 SMART lim_4 9 61 IPR001781 -
Lele41g1331 216 SMART lim_4 105 157 IPR001781 -
Lele41g1331 216 FunFam LIM domain and actin-binding 1 4 74 - -
Lele41g1331 216 ProSiteProfiles LIM domain profile. 104 164 IPR001781 -
Lele41g1331 216 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 98 131 - -
Lele41g1331 216 ProSitePatterns LIM zinc-binding domain signature. 10 44 IPR001781 -
Lele41g1331 216 Gene3D Cysteine Rich Protein 100 170 - -
Lele41g1331 216 Pfam LIM domain 10 65 IPR001781 -
Lele41g1331 216 Pfam LIM domain 106 161 IPR001781 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele41g1331 Lele-ChrLele41 21855327 21857028 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LIM Lele41g1331 LIM 1.8e-10 CL0167