Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele41g1327 ATGAACAATAGAGCTAGATATCCACCTGGGATTGGCGTAGGTCGAGGGGGAGGTATGAACTCGAACCCTGCGTTTCAACCGCGACCTCCTCAGCAACAGTATGTGCAGAGGCATATAGTGCAGAATCAACAGCAGTATCAACATCATCAACAGCAACATCAGCAATTACAACAGCAGCAGCAGCAACAACAACAGTGGCTTAGAAGAACCCAATTGAGTGTTGCTGATTCTAACGTAGCTGACGAGGTCGAGAAGACTGTGCAGTCTGAAGCCGTTGATTCAAGTTCTCAAGATTGGAAGGCAAGATTAAAGATACCACCGCCTGATACTCGCTATAGGACTGAGGATGTGACAGCAACTAAAGGAAATGAATTTGAAGATTACTTTTTGAAGCGTGAGCTGCTTATGGGAATATATGAGAAGGGTTTTGAAAGGCCTTCTCCTATCCAGGAAGAAAGTATCCCAATTGCTCTTACTGGTAGTGACATTCTTGCTAGAGCAAAAAATGGAACGGGGAAAACAGCTGCTTTTTGCATTCCTGCCCTCGAAAAAATTGATCAGGATAACAATGTTATTCAAGTTGTTATACTGGTTCCAACACGTGAGTTGGCTTTGCAAACATCACAAGTGTGTAAAGAGCTGGGAAAGCATCTGAAAATTCAAGTCATGGTTACAACAGGTGGTACCAGCCTGAAAGATGATATCATGCGTTTATACCAACCTGTTCATTTACTTGTTGGAACTCCAGGAAGAATATTAGATCTTGCAAAGAAGGGTGTATGCATTTTGAAAGACTGTAGTATGCTTGTTATGGATGAGGCTGATAAGCTTTTGTCACCAGAGTTCCAACCTTCGATAGGGCAATTGATTCAATTCCTGCCCCCAACCCGTCAAATCCTGATGTTTTCAGCTACTTTTCCTGTTACTGTAAAGGACTTCAAAGATAGATTTCTGCAGAAACCGTATGTCATTAACCTTATGGATGAGTTAACTCTGAAAGGTATTACACAATTCTATGCATTTGTGGAAGAGAGACAGAAAGTCCACTGCCTCAATACACTTTTCTCTAAGCTGCAAATAAATCAGTCAATTATCTTCTGCAATTCCGTGAATCGGGTTGAGCTCCTTGCCAAGAAAATCACAGAACTTGGCTATTCATGTTTCTATATCCATGCAAAGATGTTGCAAGATCATCGTAACAGAGTATTTCATGACTTCCGCAATGGTGCTTGTAGAAATCTTGTTTGTACTGATCTTTTTACCAGGGGAATAGATATTCAAGCAGTTAATGTGGTCATTAATTTTGATTTTCCCAAGAATTCAGAAACTTATCTGCACAGGGTTGGTCGTTCTGGGAGGTTTGGGCACCTTGGTCTAGCAGTTAACTTGATCACCTATGAGGATCGTTTTAATTTATATAGGATTGAGCAAGAACTTGGCACTGAAATAAAGCAAATTCCACCACACATTGATCAGGCAATTTATTGCCGGTGA 1494 0.411 MNNRARYPPGIGVGRGGGMNSNPAFQPRPPQQQYVQRHIVQNQQQYQHHQQQHQQLQQQQQQQQQWLRRTQLSVADSNVADEVEKTVQSEAVDSSSQDWKARLKIPPPDTRYRTEDVTATKGNEFEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTRELALQTSQVCKELGKHLKIQVMVTTGGTSLKDDIMRLYQPVHLLVGTPGRILDLAKKGVCILKDCSMLVMDEADKLLSPEFQPSIGQLIQFLPPTRQILMFSATFPVTVKDFKDRFLQKPYVINLMDELTLKGITQFYAFVEERQKVHCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQELGTEIKQIPPHIDQAIYCR 497
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele41g1327 497 Pfam Helicase conserved C-terminal domain 349 455 IPR001650 -
Lele41g1327 497 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 50 58 496 - -
Lele41g1327 497 MobiDBLite consensus disorder prediction 1 33 - -
Lele41g1327 497 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 334 494 IPR001650 -
Lele41g1327 497 Gene3D - 96 327 IPR027417 -
Lele41g1327 497 FunFam ATP-dependent RNA helicase DDX6 104 327 - -
Lele41g1327 497 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 193 477 IPR027417 -
Lele41g1327 497 SMART ultradead3 142 338 IPR014001 -
Lele41g1327 497 Coils Coil 39 59 - -
Lele41g1327 497 SMART helicmild6 374 455 IPR001650 -
Lele41g1327 497 Gene3D - 328 497 IPR027417 -
Lele41g1327 497 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 270 278 IPR000629 -
Lele41g1327 497 MobiDBLite consensus disorder prediction 87 114 - -
Lele41g1327 497 Pfam DEAD/DEAH box helicase 148 312 IPR011545 GO:0003676|GO:0005524
Lele41g1327 497 CDD SF2_C_DEAD 335 464 - -
Lele41g1327 497 CDD DEADc_DDX6 125 325 - -
Lele41g1327 497 FunFam ATP-dependent RNA helicase DDX6 328 497 - -
Lele41g1327 497 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 123 151 IPR014014 GO:0003724
Lele41g1327 497 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 154 324 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele41g1327 Lele-ChrLele41 21823095 21827190 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele41g1327 125 494 Eukaryotic Initiation Factors Gene Family AT3G19760 38.978 4.55e-96 295