Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele41g1316 ATGGATCGGGGGGACCAAATGGCGTTATCTGGGTCTGCATCTTACTATATGCAGAGGGGAATAGCTGGTTCTGCCGTACAGCCTGAGCTTCATGGCTCCCCAACTATTCACCAACTTTCTAATTCCAATCTGTCATTTCAACCCAGCATTGGGGGTGGTTCTATTGGATCCACTCTACCATTAGAATCTTCAGCCATTTCACCTCATGGTGTTAATGTAGGCGCTCCATCTGGAGTGCAATCTGGGGAACCTGTCAAAAGGAAGAGAGGAAGGCCTAGGAAATATGGTCCAGATGGAACTGTGTCGTTGACATTGACTCCAATGTCGTCTAGTCATCCCGGAAGTGGTCATTCGGGGAGTGGAACTGTGACACAGAGCCATAAGAGGGGTAGAGGGCGCCCACCTGGTTCTGGCAAGAAACAGCAGTTGGCTTCTCTTGGTAAATTGATGTCTGGTTCAGCTGGAATGGGTTTCACTCCTCATATCATCACCATTGCAGTTGGAGAAGATATTGTGTCAAAAATAATGGCATTCTCCCAGCAAGGGTCTAGAGCCGTGTGTGTATTGTCGGCCAATGGTGCTGTATCAAATGCGACCCTCTGTCAGCCTTCAACTTTGGGTGGTTCTGTCACATATGAGGGGCGTTATGAGATATTGTGCCTGTCAGGCTCTTACTTGCTTAATGAAAGTGGCGGTTCGCGCAATCGAACTGGTGGATTGAGTGTCTCTCTTGCTAGTCCTGAGGGTAAAATCATTGGTGGAGGAGTTGGTGGAATGCTTATCGCGGCATGTCCCGTTCAGGTGATAGTTGGGAGCTTTTTATGGGGTGGATCGAAGACCAAGAACAAGAAAAAAGAAGTTGAAGAAGTTCGGGTGGAGTCGGATCATCAGGCAGTTCACAATCCAGTAGCTATGAATAACATTATGGCCAATCAGAATCTCACCCCACCATCTTCTATGGGTACATGGCCGGTGTCTCGTACAATGGATATTTGCAATTCCCATGTTGACATCGATTTAATGCGTGGGTGA 1032 0.4777 MDRGDQMALSGSASYYMQRGIAGSAVQPELHGSPTIHQLSNSNLSFQPSIGGGSIGSTLPLESSAISPHGVNVGAPSGVQSGEPVKRKRGRPRKYGPDGTVSLTLTPMSSSHPGSGHSGSGTVTQSHKRGRGRPPGSGKKQQLASLGKLMSGSAGMGFTPHIITIAVGEDIVSKIMAFSQQGSRAVCVLSANGAVSNATLCQPSTLGGSVTYEGRYEILCLSGSYLLNESGGSRNRTGGLSVSLASPEGKIIGGGVGGMLIAACPVQVIVGSFLWGGSKTKNKKKEVEEVRVESDHQAVHNPVAMNNIMANQNLTPPSSMGTWPVSRTMDICNSHVDIDLMRG 343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele41g1316 343 CDD DUF296 159 273 IPR005175 -
Lele41g1316 343 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 68 309 IPR039605 GO:0003680
Lele41g1316 343 ProSiteProfiles PPC domain profile profile. 154 295 IPR005175 -
Lele41g1316 343 SMART AT_hook_2 128 140 IPR017956 GO:0003677
Lele41g1316 343 SMART AT_hook_2 86 98 IPR017956 GO:0003677
Lele41g1316 343 SUPERFAMILY AF0104/ALDC/Ptd012-like 158 275 - -
Lele41g1316 343 Gene3D - 160 300 - -
Lele41g1316 343 MobiDBLite consensus disorder prediction 102 127 - -
Lele41g1316 343 FunFam AT-hook motif nuclear-localized protein 1-like 160 291 - -
Lele41g1316 343 Pfam Plants and Prokaryotes Conserved (PCC) domain 160 273 IPR005175 -
Lele41g1316 343 MobiDBLite consensus disorder prediction 61 144 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele41g1316 Lele-ChrLele41 21782214 21788652 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele41g1316 1 343 AT-hook Motif Nuclear Localized (AHL) Family AT3G61310 48.501 9.69e-86 261