Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele41g1292 ATGGCTGGGCTTAGGACATTCCTCAAGAAAAGGCTTTCCCTTTCTGCTCACTCCGATTGCTCTGTGTTTAGAAAACTCTTCTCCACCGAACCCATCATTGATTCTCCTTCTCTTGCCCAGAGGATCAGAGATCTACCCAAGGATCTTCCTGCCAGCAACATCAAGAAAAATGTTTCCCAACTGATTGGAAGAACACCGCTTGTTTATCTTAACAAAGTCACTGAAGGATGTGGAGCTTATATTGCTGTAAAGCAAGAGATGATGCAGCCCACTTCTAGCATCAAAGACAGACCTGCAATGGCTATGATCAATGATGCAGAAAAAAAGAATCTGATATCTCCTGGGAAGACAATTCTGATAGAGCCAACATCAGGCAACATGGGGATAAGTATGGCATTTATGGCAGCCATGAAAGGCTATACGATGGTACTTACCATGCCTTCTTACACAAGCTTGGAAAGAAGGGTGACTATGAGAGCATTTGGAGCTGAGTTGATCCTCACTGATCCAACCAAGGGAATGGGAGGAACGGTTAAGAAGGCATATGAACTTCTTGAATCCACACCAAATGCTTTCATGCTTCAACAATTCTCAAACCCAGCTAATACTCAGGTGCATTTTGAAACAACTGGTCCAGAGATTTGGGAGGACACAAATGGACAAGTAGACATATTTGTTATGGGAATAGGTAGTGGAGGAACAGTTTCCGGAGTTGGACAATATTTGAAATCTAAAAATCCCAATGTTAAGATATATGGAGTGGAGCCTGCTGAGAGTAATGTTCTGAATGGTGGTAATCCTGGTCCTCATCATATTACTGGCAATGGGGTTGGTTTCAAACCAGACATATTGGACATGGATGTAATGGAGAAAGTTCTTGAAGTTAGCAGTGATGATGCAGTTAACATGGCCAGACAGTTGGCCTTGAAGGAAGGACTCATGGTAGGGATATCATCTGGAGCTAATACAGTTGCAGCACTGAGATTGGCAAGGATGCCAGAAAACAAGGGAAAACTGATTGTGACGGTTCATCCAAGTTTTGGGGAGCGGTATCTGTCATCTGTCCTGTTCCAAGAACTCCGGAGAGAGGCCGAAAACATGCAGCCAGTGGCAGTGGATTGA 1122 0.4385 MAGLRTFLKKRLSLSAHSDCSVFRKLFSTEPIIDSPSLAQRIRDLPKDLPASNIKKNVSQLIGRTPLVYLNKVTEGCGAYIAVKQEMMQPTSSIKDRPAMAMINDAEKKNLISPGKTILIEPTSGNMGISMAFMAAMKGYTMVLTMPSYTSLERRVTMRAFGAELILTDPTKGMGGTVKKAYELLESTPNAFMLQQFSNPANTQVHFETTGPEIWEDTNGQVDIFVMGIGSGGTVSGVGQYLKSKNPNVKIYGVEPAESNVLNGGNPGPHHITGNGVGFKPDILDMDVMEKVLEVSSDDAVNMARQLALKEGLMVGISSGANTVAALRLARMPENKGKLIVTVHPSFGERYLSSVLFQELRREAENMQPVAVD 373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele41g1292 373 FunFam Cysteine synthase 171 353 - -
Lele41g1292 373 Pfam Pyridoxal-phosphate dependent enzyme 59 345 IPR001926 -
Lele41g1292 373 CDD CBS_like 63 353 - -
Lele41g1292 373 SUPERFAMILY Tryptophan synthase beta subunit-like PLP-dependent enzymes 54 362 IPR036052 -
Lele41g1292 373 PANTHER CYSTATHIONINE BETA-SYNTHASE 54 363 - -
Lele41g1292 373 FunFam Cysteine synthase 89 168 - -
Lele41g1292 373 Gene3D - 60 353 IPR036052 -
Lele41g1292 373 TIGRFAM cysK: cysteine synthase A 59 357 IPR005859 GO:0004124|GO:0006535
Lele41g1292 373 Gene3D - 96 198 IPR036052 -
Lele41g1292 373 TIGRFAM cysKM: cysteine synthase 59 357 IPR005856 GO:0004124|GO:0006535
Lele41g1292 373 ProSitePatterns Cysteine synthase/cystathionine beta-synthase P-phosphate attachment site. 84 102 IPR001216 GO:0006535
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele41g1292 Lele-ChrLele41 21629925 21633213 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele41g1292 1 317 Miscellaneous Gene Families AT3G61440 76.341 2.66e-172 481
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele41g1292 41 21629925 21633213 Lele43g0100 43 1125593 1128878 hybridization
Lele41g1292 41 21629925 21633213 Lele44g0106 44 623359 626662 hybridization