Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele41g1290 ATGATTAGAAATCGTTTTATGGAGATGAATGCTCCTATAGACAGTTCATCTGTCAGCAAGTATTACAGCCTTGCTCATGCTGTGAATGAAAAGGTCATAAGGCAGCCATCTATGTTACGAGCTGGAACCTTGAGAGACTATCAGCTTGTTGGCTTGCAGTGGATGCTTTCATTGTATAACAACAAGTTAAATGGAATTTTGGCAGATGAGATGGGTCTTGGAAAAACCGTGCAGGTTATGGCCTTGATTGCCTACTTGATGGAATTTAAAGGAAATTATGGCCCGCATCTTATAATTGTTCCAAATGCAGTTCTGGTTAACTGGAAGAGTGAGTTGCATACTTGGTTACCCTCTGTGTCATGCATTTTTTATGTTGGAGGAAAGGACCATCGGTCAAAATTATTTTCTCAAGAGGTTTCTGCCATGAAATTTAATGTCCTTGTGACAACTTATGAGTTCATCATGTATGACCGGTCCAAATTGTCAAAACTTGATTGGAAGTACATCATAATTGATGAAGCACAAAGAATGAAGGATAGGGATTCAGTTCTAGCTCGTGATCTTGATAGATACCGTTGTCAGAGACGTCTTCTTCTGACAGGAACACCATTGCAGAATGATCTGAAGGAGCTCTGGTCACTTTTAAATTTACTTCTTCCAGAGGTTTTTGATAATCGAAAAGCGTTTCATGATTGGTTTTCAAAGCCTTTTCAAAAGGAAGATCCTACTCAAATTGTAGAGGATGATTGGCTTGAGACAGAAAAGAAAGTTATCATTATTCATAGACTCCATCAGATTCTTGAGCCTTTCATGCTTAGGCGTCGTGTTGAAGATGTTGAAGGCTCACTTCCACCAAAGGTCTCCATAGTTTTACGATGTAAAATGTCAGCTTTTCAGAGTGCCATTTATGACTGGATCAAATTCACGGGTACCCTTCGGCTTGATCCTGAGGATGAGAAGCGTAGAGTTCAAAAGAATCCAGTTTACCAGGTGAAGCAGTATAAAACTTTAAATAATAGGTGCATGGAGCTGCGTAAGACCTGCAATCATCCATTGCTTAATTACCCATACTTCCATGACTTATCTAAAGAGTTCCTTCTGAAATCTTGTGGGAAATTGTGGATCCTTGATAGGATCCTTATTAAACTGCAACGAACTGGACATCGAGTTCTGCTGTTTAGTACTATGACAAAGCTTCTAGACATTATAGAGGAATACCTGCAATGGCGACGACTTGTTTACAGAAGAATTGATGGGACAACTAGTTTAGAAGACCGTGAAGCAGCTATAGTGGACTTTAATAGTCCAGATTCAGACTGTTTCATCTTCTTGCTTAGTATCAGAGCTGCTGGGAGAGGCCTTAACCTTCAGTCTGCAGACACAGTCATCATATATGATCCTGATCCAAACCCGAAAAATGAGGAGCAGGCAGTTGCAAGAGCTCATCGCATTGGACAGACTAGAGAAGTCAGGGTTCTCTACATGGAAGCTGTTGTCGACCAAATTCCTAGCCATCAAAAAGAGGATGAACATAGAAGTGGGGGCACTGTCAATTTGGAGGATGAACTTGCAGGTAAGGATCGTTATATGGGATCCATTGAGAGCCTCATTAGGAAGAATATTCAACAATACAAGATTGATATGGCTGATGAGGTCATCAATGCTGGACGTTTTGATCAAAGAACAACACATGAAGAGAGACGTATGACTTTAGAGACATTATTACATGATGAAGAAAGGTATCAAGAAACTGTCCATGATGTTCCCTCACTACAGGAGGTGAATCGCATGATTGCCAGGAGTGAAGAAGAACTCGAGCTGTTTGATCAAATGGATGAAGAACTGGATTGGACTGAGGAGATGACTCGGTATGATCAGGTGCCTAAGTGGCTTAGAGCCAGTACAAGAGAAGTCAATGCCACTATTGCTGCGTTATCCAAAAGACCTTCAAAGAACACTTTCTTGGGTGGTAGTATCACTGTGGAATCCGGTGAAATGGGTTCCGATGCATCTGCAAAATCTGAAAGGAGAAGAGGACGACCCAAGGGGAAAAAACATCCTAGTTATAGAGAGTTAGAAGATGAAAATGGAGAATCCTCTGAAGCAAGTTCTGAAGAAAGAAATGGATATTCTGCAAATGAAGGGGAAATAGGAGAATTTGAAGATGATGGGTATAGTGGTGCTGATGGAGCTCAACCAAATAATAAAGATCAAATGGATCATGGTGCAGGATATGAATTTCCTCGTTCCTCGGAAAGCATCAGAAACAGTCATATGGTTGAAGAAGCTGCTTCCTCAGGATCGTCCTCAGACAGTCAAAGATTGATACAGACTATTCCTTCAGCTTCCTCTAAGAAATTTGGTTCCCTCTCTGCATTAGATTCTAGGCCAAGTTCCATTTCCAAAAGGATGACAGATGACTTAGAGGAAGGGGAAATTGCGGTATCTGGTGATTCTCACATGGATCACCAGCAATCTGGCAGTTGGATTCATGATCGTGATGAAGGAGAAGATGAACAAGTTTTGCAGCCCAAATTTAAACGTAAACGCAGTCGCCGTGTTCGACCCCGTCATACTATGGACAGGTCTGAGGAAAAGTCTATCGCTGAGATGGCATCTCTTCAACGTGGAGAATCAGCTCATTTGACTGTCCAAGCTGACAATAAATATCATGCACAATCACTGACTGACCCAGATGTAAAATCACGTGGAGAATTTAATGCTGCCAGGCATGATCAGAATGAGTTCAAAAATAAGCGAAGTTTGCCTTCAAAGAGAGTAACTAATAAATTGCATGGTTCACCTAAATCTGGTAGATTGAATTGTATTTCTACCCCTTCAGAGGATGGCGGTGAACAACTCAGAGAAAAGTGGGAGGGTAAGCCTATCAATTCAAGTGGGTCTTCAGCAATTGGTGCTAGAATGTCTGAAATAGTCCAGAGAAAGTGCAAGAATGTAATTAGCAAGTTTCAAAGGAGAATAGATAAGGAAGGTCATCAAATTGTACCTTTGCTTACTGACTTGTGGAAGAAGAATTCTGGACACACTGGTGGATGTGGGAATAATTGGTTGGACATACAGAAGATTGATCACCGAATTGATAGGTTTGAATATAACGGAGTATTGGAGCTTGTGTGTGATGTGCAGTTCATGTTGAAGTGTGCAATGGATTTTTATGGATTCTCACATGAGGTAAGATCTGAAGCAAGGAAGGTCCATGATCTCTTCTTTGATATCTTGAAAGCTGCATTTCCGGATACGGACTTCCAAGGGCCAAGAAGTGCACTTTCTTTTGCTGCACCGACTTCTGTCAGTACTCTAACATCCCCGAGGCAATTGGCTGTTAGCCAAAGCAGGAGACACAAGTTGATAAATGAGGTGGAAAATGATCCAAGCCCTTCACAGAAGCAACTGCATCGGGGTTTTATTCCAAGTGGTGAAAGCACCAGGATCAGAGTCCAACTGCCACCAAAGGATTCAAGAACTGGAACAGCTTCTGGTACCAGAGAGCAAATTCAGCAGGATGATTCTCCGCTACTCACTCATCCAGGTGAACTGGTAGTATGCAAGAAGAGAAGAAATGAGAGAGACAAATCCTCAGGGAAGACTAGGGGTGGTCCTGTTTCACCACCTAGCTCTGGTCCTGCTATAAGAAGTCCGGGACCAAGTTCAGGTTTAAAGGATGCTAGACTAGCTCAACAGCCTGCTCAAGGGTGGACACGCCAGCCATCTCAACAAGCAAATGGGTCTGGTGGATCGGCCGGTTGGGCGAATCCTGTGAAGCGGTTGAGGACGGATTCTGGGAAAAGGAGACCAAGCCATCTATAA 3828 0.4232 MIRNRFMEMNAPIDSSSVSKYYSLAHAVNEKVIRQPSMLRAGTLRDYQLVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEFKGNYGPHLIIVPNAVLVNWKSELHTWLPSVSCIFYVGGKDHRSKLFSQEVSAMKFNVLVTTYEFIMYDRSKLSKLDWKYIIIDEAQRMKDRDSVLARDLDRYRCQRRLLLTGTPLQNDLKELWSLLNLLLPEVFDNRKAFHDWFSKPFQKEDPTQIVEDDWLETEKKVIIIHRLHQILEPFMLRRRVEDVEGSLPPKVSIVLRCKMSAFQSAIYDWIKFTGTLRLDPEDEKRRVQKNPVYQVKQYKTLNNRCMELRKTCNHPLLNYPYFHDLSKEFLLKSCGKLWILDRILIKLQRTGHRVLLFSTMTKLLDIIEEYLQWRRLVYRRIDGTTSLEDREAAIVDFNSPDSDCFIFLLSIRAAGRGLNLQSADTVIIYDPDPNPKNEEQAVARAHRIGQTREVRVLYMEAVVDQIPSHQKEDEHRSGGTVNLEDELAGKDRYMGSIESLIRKNIQQYKIDMADEVINAGRFDQRTTHEERRMTLETLLHDEERYQETVHDVPSLQEVNRMIARSEEELELFDQMDEELDWTEEMTRYDQVPKWLRASTREVNATIAALSKRPSKNTFLGGSITVESGEMGSDASAKSERRRGRPKGKKHPSYRELEDENGESSEASSEERNGYSANEGEIGEFEDDGYSGADGAQPNNKDQMDHGAGYEFPRSSESIRNSHMVEEAASSGSSSDSQRLIQTIPSASSKKFGSLSALDSRPSSISKRMTDDLEEGEIAVSGDSHMDHQQSGSWIHDRDEGEDEQVLQPKFKRKRSRRVRPRHTMDRSEEKSIAEMASLQRGESAHLTVQADNKYHAQSLTDPDVKSRGEFNAARHDQNEFKNKRSLPSKRVTNKLHGSPKSGRLNCISTPSEDGGEQLREKWEGKPINSSGSSAIGARMSEIVQRKCKNVISKFQRRIDKEGHQIVPLLTDLWKKNSGHTGGCGNNWLDIQKIDHRIDRFEYNGVLELVCDVQFMLKCAMDFYGFSHEVRSEARKVHDLFFDILKAAFPDTDFQGPRSALSFAAPTSVSTLTSPRQLAVSQSRRHKLINEVENDPSPSQKQLHRGFIPSGESTRIRVQLPPKDSRTGTASGTREQIQQDDSPLLTHPGELVVCKKRRNERDKSSGKTRGGPVSPPSSGPAIRSPGPSSGLKDARLAQQPAQGWTRQPSQQANGSGGSAGWANPVKRLRTDSGKRRPSHL 1275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele41g1290 1275 SMART bromo_6 976 1085 IPR001487 GO:0005515
Lele41g1290 1275 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 278 615 IPR027417 -
Lele41g1290 1275 CDD SF2_C_SNF 370 495 - -
Lele41g1290 1275 SMART helicmild6 401 485 IPR001650 -
Lele41g1290 1275 Gene3D - 974 1127 IPR036427 GO:0005515
Lele41g1290 1275 MobiDBLite consensus disorder prediction 1159 1178 - -
Lele41g1290 1275 Pfam Helicase conserved C-terminal domain 374 485 IPR001650 -
Lele41g1290 1275 FunFam ATP-dependent helicase BRM 35 283 - -
Lele41g1290 1275 MobiDBLite consensus disorder prediction 825 845 - -
Lele41g1290 1275 MobiDBLite consensus disorder prediction 1128 1142 - -
Lele41g1290 1275 MobiDBLite consensus disorder prediction 800 817 - -
Lele41g1290 1275 MobiDBLite consensus disorder prediction 650 865 - -
Lele41g1290 1275 Gene3D - 35 283 IPR038718 -
Lele41g1290 1275 MobiDBLite consensus disorder prediction 1235 1253 - -
Lele41g1290 1275 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 375 552 IPR001650 -
Lele41g1290 1275 SUPERFAMILY Bromodomain 1025 1087 IPR036427 GO:0005515
Lele41g1290 1275 MobiDBLite consensus disorder prediction 908 922 - -
Lele41g1290 1275 PANTHER SNF2/RAD54 HELICASE FAMILY 29 836 - -
Lele41g1290 1275 MobiDBLite consensus disorder prediction 650 667 - -
Lele41g1290 1275 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 26 274 IPR027417 -
Lele41g1290 1275 MobiDBLite consensus disorder prediction 908 966 - -
Lele41g1290 1275 FunFam ATP-dependent helicase BRM 284 494 - -
Lele41g1290 1275 Gene3D - 284 493 IPR027417 -
Lele41g1290 1275 FunFam Brahma1 974 1095 - -
Lele41g1290 1275 SMART ultradead3 40 229 IPR014001 -
Lele41g1290 1275 MobiDBLite consensus disorder prediction 1186 1202 - -
Lele41g1290 1275 MobiDBLite consensus disorder prediction 750 799 - -
Lele41g1290 1275 MobiDBLite consensus disorder prediction 927 948 - -
Lele41g1290 1275 CDD Bromodomain 1025 1080 - -
Lele41g1290 1275 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 56 221 IPR014001 -
Lele41g1290 1275 Pfam SNF2-related domain 47 351 IPR000330 GO:0005524|GO:0140658
Lele41g1290 1275 Coils Coil 591 611 - -
Lele41g1290 1275 MobiDBLite consensus disorder prediction 1125 1275 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele41g1290 Lele-ChrLele41 21615897 21622384 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele41g1290 65 510 RAD5 or RAD16-like Gene Family AT1G02670 26.112 5.10e-30 125
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Lele41g1290 SNF2_N 2.1e-65 CL0023