Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele41g1288 ATGCTCTTCGTCCCCCTTTTCATACCTCTCTTCTACATTGTTCGATCGCATGCCAAGTCTGGTGATCTAGAAGCAGCACGCGGCTTATTCGGTGAAATGAGACATCGAACAGTTGTCTCATGGAATGCCTTGATTTCTGGCTATTCCAAATGGGGAAGATTCAATGAAGCTTCAGCTCTTGCTTCATTCATGCATCACTGTAATTTCAAACTCAATGAAAGCTCCTTTTCTACATTACTGAGTGTATGGGCACATTCTGGGTCTCTGTGTCATGGAGATCAAGTTCATTCCTTGCTTTTAAAATCTGGTTTTGTGGGAAGCTCTTTGCTGAATTTTTACTCATGTTGCTGTAAAATTGATGAAGCTAAGTTGGTTTTTGATGAGCTGCATGATTGGAATGAGTTGTTGTTTAGTTTGATGCTTTTAGTATATGTTCAGTGTAACATGATGGGCAATGCATTGAATGTATTTCATAAAATGCCAACCCGGGATGTTGTAGCTTGGACTATATTGATATCAGGCTATGCTAAAAGTGAAAACGGGAGTGAAAAGGCTTTGGAATTGTTTGAGTGGATGAGAAGTTTTGGGACATTGCCAAATCAGTTCACGTTGGATTGTGTTATAAGGACTTGTGCTAAACTGAGAGTTCTACATCAAGGGAAGGCTGTTCATGGGCTCTGTATTAAGTGTGGTGGTGTTGAAGCTTTAGCTGGTAAGCTCCGGTTCTGTTGCGATCGAGTTTCTTATTGGTTTTTGAAAGAGAATTGCGCTCGACGTACTTCCTCAATGCTTGGTAATGGGAAATCAGTGGATTTCTATAAGCTCTTCGAGGTTGTTAAGGAGAACGGTGGGTATGATGCAGTCTCCAAAAACCGTTTATGGGATATGGTGGGTGAACAATCTGGGTTGGGCACGAGCATTGGTTCGTTTGTGCAAGTGATTTACAATAAGTACTTGATTACTTTAGAGATATGGCTAAAACAAGCTGCTGATAATAAGGTCTCTGACTGTAGTCTGGAGTTTAACAGAGTTGATTTTGGCAGGCTTTTGATGGAGTTGCACACAGAATTTGAGGGGTCCTTGTCGGATTGTACTGATGTAGAGTTGGGAGATGAGATGTGTCAACGTTCTGACTTTAAAACTGAATATAAACGCCAGGATGGTGAGGTGTTGTTCGATGCTAAGGGAGTGAAGAGCAGGTCTGGAGGGGCCAAAAAAGTTCAGAATGGAGGAGTTATTGATTTGAATATACCAGGGTTTGAGTTGAGAGAAGTCACTACAGCAACAACAACAATTGAATTGAATGGACTCAGTCCAGGAAATTTGTGCATTGTCAGTGAGGTAAACAAAATGCCCATATTATCGGATGGAGGCAAAAGATGTGCCAATGATGATGTTTTGGTGTTGGACCCATCTGATGTAAGTCCAGAGAGCTTTAACCGTAAAAGGAAGAGGGAGTCTATGCAGGGAATGCTAAGCTGGTTGTCTGGCATTGCAAAGAATCCATGTGATCCCGTTGTTGATTCAATACCTGAAAAATCAAAGTGGAGGTCTCACAGCAATGAGAAGGTCTGGAAGCAGGTTTTGTTGTTTCGGGAGGATGTTTTTTTAAAGCGACATGCAGGGTCAAGCAGTGAACAACTGAATTGGCAGAGACAAAAGATGCATCCATCCATGTACGAAGATCTCCTTGAGGTGACATACAATCTTAGGGAGAGGTGTAACTGTAACAAGAAGCTTTTATTTGAAAAATCTAGGTCTGTAAGAGTCTCTTCAGATTCATCCATGGAAACCAAGGGTAATCTGGAGAGAACCTCTAGTCCTCACAATGAAGATTCTGCTGAGAAAAAGCTGCCTGATTCCTCTACTGCTCCATCAAGTCTTGACAATTGTGGCATAGTTCCCATCCCTCTGGGGCCAAGTCATCAAGCTAAAGTACCAGAATGGACTGGCATGACTTCTGAAAGTGATACCAAGTGGTTGGGGACCCGAATATGGCCATCAGAGAAAGTGAATCACAGACTCCTGATTGAGAGGGACCCCATTGTCAAGGGAAGACAAGATTCATGTGGCTGCCAAGTACAGGGTTCCGTTGAATGTGTCAGATTTCATGTTGCTGAGAAAAGGGCTAAGGTGAAGCTGGAATTAGGTGTGGCTTTTTACCTGTGGAATTTAGACAAGGTAGGTGAAGATGTTAGGCAATCATGGACAGCGGATGAAGAGAAGAAGTTTAAGGATGTGGTGCGATCAAATCCTCCATCACTAGAGAGATACTATTGGGATCATATTTTCAAGTCATTTCCTAAGAAGACCAGGGAAGATTTAGTTAGCTACTATTTCAATGTCTTTCTTTTGCAGCGCCGAGGATATCAGAACAGGAATACTCCAAATGAAATTGATAGTGATGATGAAGAATCAGAATTTGGACCTTTGAGGAATGTTTTTGGACAGCAAGCACTGAAGCCATCCAGTTCCATCTTGCTAACCCCCAAAAAGTCTCAGACAAAGAACAAATAG 2517 0.4207 MLFVPLFIPLFYIVRSHAKSGDLEAARGLFGEMRHRTVVSWNALISGYSKWGRFNEASALASFMHHCNFKLNESSFSTLLSVWAHSGSLCHGDQVHSLLLKSGFVGSSLLNFYSCCCKIDEAKLVFDELHDWNELLFSLMLLVYVQCNMMGNALNVFHKMPTRDVVAWTILISGYAKSENGSEKALELFEWMRSFGTLPNQFTLDCVIRTCAKLRVLHQGKAVHGLCIKCGGVEALAGKLRFCCDRVSYWFLKENCARRTSSMLGNGKSVDFYKLFEVVKENGGYDAVSKNRLWDMVGEQSGLGTSIGSFVQVIYNKYLITLEIWLKQAADNKVSDCSLEFNRVDFGRLLMELHTEFEGSLSDCTDVELGDEMCQRSDFKTEYKRQDGEVLFDAKGVKSRSGGAKKVQNGGVIDLNIPGFELREVTTATTTIELNGLSPGNLCIVSEVNKMPILSDGGKRCANDDVLVLDPSDVSPESFNRKRKRESMQGMLSWLSGIAKNPCDPVVDSIPEKSKWRSHSNEKVWKQVLLFREDVFLKRHAGSSSEQLNWQRQKMHPSMYEDLLEVTYNLRERCNCNKKLLFEKSRSVRVSSDSSMETKGNLERTSSPHNEDSAEKKLPDSSTAPSSLDNCGIVPIPLGPSHQAKVPEWTGMTSESDTKWLGTRIWPSEKVNHRLLIERDPIVKGRQDSCGCQVQGSVECVRFHVAEKRAKVKLELGVAFYLWNLDKVGEDVRQSWTADEEKKFKDVVRSNPPSLERYYWDHIFKSFPKKTREDLVSYYFNVFLLQRRGYQNRNTPNEIDSDDEESEFGPLRNVFGQQALKPSSSILLTPKKSQTKNK 838
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele41g1288 838 SMART sant 732 785 IPR001005 -
Lele41g1288 838 Pfam PPR repeat family 37 81 IPR002885 -
Lele41g1288 838 Pfam PPR repeat family 163 213 IPR002885 -
Lele41g1288 838 Pfam ARID/BRIGHT DNA binding domain 255 322 IPR001606 GO:0003677
Lele41g1288 838 MobiDBLite consensus disorder prediction 592 626 - -
Lele41g1288 838 Gene3D - 241 337 IPR036431 GO:0003677
Lele41g1288 838 SMART bright_3 244 328 IPR001606 GO:0003677
Lele41g1288 838 MobiDBLite consensus disorder prediction 817 838 - -
Lele41g1288 838 CDD ARID 251 323 - -
Lele41g1288 838 CDD SANT 735 783 IPR001005 -
Lele41g1288 838 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 37 71 IPR002885 -
Lele41g1288 838 SMART ELM2_2 636 687 IPR000949 -
Lele41g1288 838 TIGRFAM PPR: pentatricopeptide repeat domain 166 200 IPR002885 -
Lele41g1288 838 TIGRFAM PPR: pentatricopeptide repeat domain 39 72 IPR002885 -
Lele41g1288 838 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 164 199 IPR002885 -
Lele41g1288 838 Pfam Myb-like DNA-binding domain 733 782 IPR001005 -
Lele41g1288 838 ProSiteProfiles ARID domain profile. 236 327 IPR001606 GO:0003677
Lele41g1288 838 Pfam PPR repeat 14 36 IPR002885 -
Lele41g1288 838 SMART ARID_2 234 323 - -
Lele41g1288 838 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 2 239 835 - -
Lele41g1288 838 MobiDBLite consensus disorder prediction 604 618 - -
Lele41g1288 838 MobiDBLite consensus disorder prediction 816 838 - -
Lele41g1288 838 Gene3D Tetratricopeptide repeat domain 12 94 IPR011990 GO:0005515
Lele41g1288 838 Gene3D Tetratricopeptide repeat domain 95 222 IPR011990 GO:0005515
Lele41g1288 838 SUPERFAMILY ARID-like 266 337 IPR036431 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele41g1288 Lele-ChrLele41 21601033 21606570 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele41g1288 13 234 Glycoside Hydrolase AT3G49170 27.468 2.75e-10 62.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Lele41g1288 ARID 6.9e-09 CL0123