Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele41g1286 ATGGGAGGTTGCTGCTGCAGTGCTAGAAAACCTCATCTCCATGGAACACCTGTTTATATCTATTGTCCACCTGCTTTGGAAGAGCACGAGTCTTTAACTACTAATGCTGGTACTGCTGGTTCACTCACTGCCGGATTGCTGGTGAGTTTGGACCTTCAAGGGTCAACACCTGATACTTACCGGCCCCCTCCTGCACCATTGCCATATGATACGGTTTTGGGTTGTCCAGCATCAACTGATTCTGAGTCTGGCAGAGAAACAGTTAGTGGTAGTAGTTTTGCAACTTTAATTACATGCGAAGATATTGAAGACTCAGAATGCCAAGTTCAAGCTAATTCTATGCCTCCGTCTCCAAGGAAGCTAGAACTAACAAAATCAAATGAATCTCATGTATTAGTGACAGAGGAAGAGGATGGTTGCCCCATTTGTCTTGAAGAATATGATATTGAGAATCCTAAAACTCTGACCAAGTGTGAACACCACTTTCACCTATCTTGCATTCTTGAGTGGATGGAACGAAGTGACTCTTGTCCCATATGCGATCAGGAGATGATCTTTGACCAGACACTGAATTAG 576 0.4375 MGGCCCSARKPHLHGTPVYIYCPPALEEHESLTTNAGTAGSLTAGLLVSLDLQGSTPDTYRPPPAPLPYDTVLGCPASTDSESGRETVSGSSFATLITCEDIEDSECQVQANSMPPSPRKLELTKSNESHVLVTEEEDGCPICLEEYDIENPKTLTKCEHHFHLSCILEWMERSDSCPICDQEMIFDQTLN 191
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele41g1286 191 SUPERFAMILY RING/U-box 134 187 - -
Lele41g1286 191 ProSiteProfiles Zinc finger RING-type profile. 140 181 IPR001841 -
Lele41g1286 191 Pfam Ring finger domain 140 180 IPR001841 -
Lele41g1286 191 SMART ring_2 140 180 IPR001841 -
Lele41g1286 191 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 117 187 IPR013083 -
Lele41g1286 191 FunFam Putative E3 ubiquitin-protein ligase RHB1A 116 185 - -
Lele41g1286 191 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE 36 188 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele41g1286 Lele-ChrLele41 21586587 21588743 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele41g1286 1 191 C3H Transcription Factor Family AT4G00335 58.115 1.71e-76 226
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele41g1286 41 21586587 21588743 Lele43g0105 43 1164286 1166445 hybridization
Lele41g1286 41 21586587 21588743 Lele44g0111 44 665241 667437 hybridization