Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele41g1280 ATGGGTTTTCCGGTGGGATACACCGACGTCGTTTTACCCAATCTATTCCTCCACACACTCTCGCTCCTCGGATTCATCCGCAACCTAATCTTCCTCCTCTTCCACTTTCTCGGCCTCTCCGATTTCCTCGAAACCGAGGTCGTCTGGTCCGAATCTCACGCTCGACTGCCTGACAGCCCCCCGGTCTCCGCGCTGCTGATCCGAGAATTCCTCCCCGTCGTCAAGTTCGGCGAGCTCCTCGCCGCTAACGCCGCCGGCGACTCGCCGGAGAGTTGTGCCGTCTGCCTGTACGAGTTTGAGAACGAGGAGGAAATCAGGTGCTTGACCAATTGCAAGCACATTTTTCACCGGGCTTGTCTGGACCGTTGGATGGATCACGATCAGAAGACTTGTCCCTTGTGCAGGACACCCTTTGTGCCTGATGTTATGCAGCATGATTTTAATCAACGGCTCTGGGCCGCTTCTGGATTCTCTGATGTTTATGGAGACTACACTTCCCTGTGA 504 0.5496 MGFPVGYTDVVLPNLFLHTLSLLGFIRNLIFLLFHFLGLSDFLETEVVWSESHARLPDSPPVSALLIREFLPVVKFGELLAANAAGDSPESCAVCLYEFENEEEIRCLTNCKHIFHRACLDRWMDHDQKTCPLCRTPFVPDVMQHDFNQRLWAASGFSDVYGDYTSL 167
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele41g1280 167 CDD RING-H2 92 135 - -
Lele41g1280 167 FunFam RING-H2 finger protein ATL73 67 142 - -
Lele41g1280 167 Pfam Ring finger domain 91 135 IPR001841 -
Lele41g1280 167 SUPERFAMILY RING/U-box 91 145 - -
Lele41g1280 167 SMART ring_2 92 134 IPR001841 -
Lele41g1280 167 PANTHER RING ZINC FINGER PROTEIN-RELATED 20 156 - -
Lele41g1280 167 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 53 140 IPR013083 -
Lele41g1280 167 ProSiteProfiles Zinc finger RING-type profile. 92 135 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele41g1280 Lele-ChrLele41 21539874 21540377 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele41g1280 1 156 C3H Transcription Factor Family AT1G63840 53.333 5.40e-55 169
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele41g1280 41 21539874 21540377 Lele43g0112 43 1209038 1209541 hybridization
Lele41g1280 41 21539874 21540377 Lele44g0117 44 714296 714799 hybridization