Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele41g1265 ATGGTGTCCGTGAACCCAAATCCAGCACAAAGTTTTTACTTCTTCGATCCTATGAATACCGGCCTTACCGGTCTCAATCACCCTCTGCCGCCCCCGATGGCGACTCCGGCCGCTGCCAATACGTATGCGGATGATCCGAACAAGAAGATCCGAAAACCGTATACAATTACAAAGTCCCGAGAGAACTGGTCCGAGCAGGAGCACGACAAGTTTCTCGAAGCTCTCCAATTATTCGACCGTGATTGGAAGAAGATTGAAGCATTTGTTGGGTCAAAAACTGTTATCCAGATAAGAAGTCATGCGCAGAAGTATTTTCTAAAAGTTCAGAAGAATGGGACTAGTGAACATGTACCTCCTCCGCGGCCGAAGAGAAAAGCTGCTCACCCTTATCCACAAAAGGCCCCTAAAAATGCTGCATTGGTATCTCAAGGTACCGGACCAATGCAATCTTCATCTGCTTTTGCTGAGCCTGCGTACATTTATAGGCCAGATTCATCATCCGTGCTCGGAACACCGGTTGCCAGTGTGCCTTTGTCATCTTGGAATTGTAATGCTATGCCGCCTGTCAGTATGCCGCAAGTGGCTAAAGATGATAGGGGATTGGTTGGACAAGCCGTTCCTCGTAATTGTTGCTATAGCAGTAGTAACGAGAGCACTCCCGGAGTTTGGCCTAATAATAAAAGTATAGAGCAAGTGGACCAAGGCAAGCCAATAACTGTAATGCCAGATTTTGCACAAATCTATCGGTTCATTGGTAGCGTGTTCGATCCAAATGCAACTGATCATCTACAGACACTGAAAAAGATGGACCCAATAAATGTGGAAACAGTATTGTTGTTGATGAGAAACCTCTCCATCAATTTAACGAGCCCCAAGTTTAAGGATCATCAGAAGTTGCTTTCGGCGTATGATGTTGAACCCGGTAAAGCGAAGAGCGGTGGTCTTTACAATGATCCACTGACTAACAAATCCGAGAGTGCTGTTCTGTCTGCTTAG 996 0.4598 MVSVNPNPAQSFYFFDPMNTGLTGLNHPLPPPMATPAAANTYADDPNKKIRKPYTITKSRENWSEQEHDKFLEALQLFDRDWKKIEAFVGSKTVIQIRSHAQKYFLKVQKNGTSEHVPPPRPKRKAAHPYPQKAPKNAALVSQGTGPMQSSSAFAEPAYIYRPDSSSVLGTPVASVPLSSWNCNAMPPVSMPQVAKDDRGLVGQAVPRNCCYSSSNESTPGVWPNNKSIEQVDQGKPITVMPDFAQIYRFIGSVFDPNATDHLQTLKKMDPINVETVLLLMRNLSINLTSPKFKDHQKLLSAYDVEPGKAKSGGLYNDPLTNKSESAVLSA 331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele41g1265 331 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 55 109 IPR017930 -
Lele41g1265 331 PANTHER SWI/SNF COMPLEX-RELATED 40 289 - -
Lele41g1265 331 MobiDBLite consensus disorder prediction 307 331 - -
Lele41g1265 331 SUPERFAMILY Homeodomain-like 54 110 IPR009057 -
Lele41g1265 331 Pfam Myb-like DNA-binding domain 60 105 IPR001005 -
Lele41g1265 331 MobiDBLite consensus disorder prediction 109 134 - -
Lele41g1265 331 ProSiteProfiles Myb-like domain profile. 55 105 IPR001005 -
Lele41g1265 331 SMART sant 59 107 IPR001005 -
Lele41g1265 331 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 58 107 IPR006447 GO:0003677
Lele41g1265 331 CDD SANT 62 105 IPR001005 -
Lele41g1265 331 ProSiteProfiles SANT domain profile. 58 111 IPR017884 -
Lele41g1265 331 MobiDBLite consensus disorder prediction 317 331 - -
Lele41g1265 331 FunFam protein REVEILLE 6 isoform X1 62 110 - -
Lele41g1265 331 Gene3D - 62 110 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele41g1265 Lele-ChrLele41 21438221 21440388 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Lele41g1265 Myb_DNA-binding 7.7e-11 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele41g1265 41 21438221 21440388 Lele43g0130 43 1323886 1327413 hybridization
Lele41g1265 41 21438221 21440388 Lele44g0136 44 830054 833729 hybridization