Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele41g1248 ATGGAAAACCACCTCCTGGTGGTGGACCCACCAAACCCTCCACCTCCGCCACCACCTCAAAACCCTACCTCCTTCATCTTCCCGGCATTGTCATCATCGGCGCTGGAAAAGACGATGGACCCTCAAGTGCTGCTCGACATCGACTGGGCTAACATTTTCTCATCAGGGCAAATCAATAACTTGCAGGTTGGGGCCGAGGGCAGTTACAAGCCAATGGAGGAATGTTCGTCGAGTTTGATGGGTGAAATGAATATGGAAAAGGAGAATCATAATACCAAAGAGAAGAGAAGAGGAGGAGGAGGAGGGAGGGTGAAGAAGACAACGAGACCGAGGTTTGCGTTTCAGACGAGAAGTGCAGATGATATTCTCGACGACGGTTACCGTTGGAGGAAGTATGGCCAGAAAGCTGTCAAGGATAGCATTTATCCCAGATTAACTGCGATAAATAGATCACTAAGAGAGCTACTACAGATGCACGCATCACACCTGCAGTGTGAAGAAACAAGTGCAGAGGTTGTCGAAAGACACAAGCATCGTGGTGACAACGTACGAGGGAATTCACAACCACCCTTGCGAGAAGCTCATGGAAACCCTCACTCCTCTCCTCAAGCAAATCCAATTCCTCACCAGCTTCTAGCTCCCCCTTCATCTATCAAATGTTCCTGCGCATGATGGGAGTTGAGGAAAAAAGTGACGGTGGCAGTGATATCTGTTAGTGTAATAATCGGTTTATGGAAACTGTCGCAGGCCGTCAAGAACTACGTGGCGCAGAAGATCGCCGACGCGCCCATGCCGGAGGCGACTGTGGACGACGTAGACTTCAAGCGCGTGGGCCGCGATGGCGTCGAGTACTTGGCCAAGGTCTCGGTTTCGAATCCCTACCCGACTCCTCTGCCCATTTCTGAAATATCCTACTCGCTCAAGAGCGATGGAAGGGAGATAGCGTCGGGGGTAATACCAGACCCAGGGTCGTTGAAGGCGAAGGCATCGACGGTGGTGGAAGTGCCGGTGAAGGCGGCTCACAGTATATTATTGAGCTTAGGAAGAGACGTAGCCGCGGATTGGGACATAGACTACAAATTGGATTTGGTGTTCATCATTGATCTTCCGGTCATCGGCAACATCAAGGTTCCTCTTTCTCAACAGGGCGAGATCAAGCTTCCTACCCTCTCTGATTGGTTCGCCTGA 1188 0.5101 MENHLLVVDPPNPPPPPPPQNPTSFIFPALSSSALEKTMDPQVLLDIDWANIFSSGQINNLQVGAEGSYKPMEECSSSLMGEMNMEKENHNTKEKRRGGGGGRVKKTTRPRFAFQTRSADDILDDGYRWRKYGQKAVKDSIYPRLTAINRSLRELLQMHASHLQCEETSAEVVERHKHRGDNVRGNSQPPLREAHGNPHSSPQANPIPHQLLAPPSSIKCSCAXWELRKKVTVAVISVSVIIGLWKLSQAVKNYVAQKIADAPMPEATVDDVDFKRVGRDGVEYLAKVSVSNPYPTPLPISEISYSLKSDGREIASGVIPDPGSLKAKASTVVEVPVKAAHSILLSLGRDVAADWDIDYKLDLVFIIDLPVIGNIKVPLSQQGEIKLPTLSDWFA 395
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele41g1248 395 Gene3D WRKY domain 110 183 IPR036576 GO:0003700|GO:0006355|GO:0043565
Lele41g1248 395 MobiDBLite consensus disorder prediction 175 210 - -
Lele41g1248 395 MobiDBLite consensus disorder prediction 86 106 - -
Lele41g1248 395 SMART WRKY_cls 123 180 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lele41g1248 395 Pfam Late embryogenesis abundant protein 287 383 IPR004864 -
Lele41g1248 395 ProSiteProfiles WRKY domain profile. 118 144 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lele41g1248 395 PANTHER - 170 389 IPR045043 -
Lele41g1248 395 MobiDBLite consensus disorder prediction 8 24 - -
Lele41g1248 395 SUPERFAMILY WRKY DNA-binding domain 116 145 IPR036576 GO:0003700|GO:0006355|GO:0043565
Lele41g1248 395 MobiDBLite consensus disorder prediction 1 24 - -
Lele41g1248 395 SUPERFAMILY LEA14-like 249 393 - -
Lele41g1248 395 Gene3D - 260 394 - -
Lele41g1248 395 SMART why 267 384 IPR013990 GO:0009269
Lele41g1248 395 Pfam WRKY DNA -binding domain 124 144 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele41g1248 Lele-ChrLele41 21307644 21313106 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele41g1248 103 176 WRKY Transcription Factor Family AT2G46130 48.649 3.49e-18 77.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Lele41g1248 LEA_2 1.9e-17 CL0159
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele41g1248 41 21307644 21313106 Lele43g0148 43 1442795 1444163 hybridization
Lele41g1248 41 21307644 21313106 Lele44g0150 44 959506 960182 hybridization