Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele41g1247 ATGGGCGAGCCTGAGCAAGCCCAGCCCTTAGCAGCAGCTTCCGGCGCCGGCGCCGATAAGGGAGCTCGTCGGAGAAGAATGAAATGGTGTGGATGTATATCAGTCTCTATTCTACTTGTAATTATAGTGATAATCATTATCTTAATATTTACAGTGTTGAAGGTCAAAGATCCCAAAATAGCAATGAATCAGGTGAAAGTCACAAATCTAGATCTCAAGGTCGATGCCGTGCCTCGCCTTCAAGTTAGGGTCAATATGACTCTCGCGGTGGCTATGTCGATCAAAAATCCCAATGCGGTGTCGTTCAGATTTGACAACACCACCACCACCATCGATTACCATGGCACCACGGTGGCGGAGGCGTATGGGCCGCCGGGGAGGGCGAAGGCACGGAGGACGTTTCCGATGAATCTGACGGTGGACGTGATGGCGGACCGCCTTATGAGCAGCTCGGGGCTCTTCACGGACATCACCGGCGGCGAGATGAACATGACCAGCTACTCGATAGTTCCGGGAAGAGTGAATATTTGGAATATCGTGAAGAAACATGTGGAGATCAGGATGAATTGCTCTTTGACCATTGATATCAGTGGCCGATCGGTCAAGGATATGAATTGCCAGCAGTTCAAGTACGATGAAGAAGATGAACCAGGAGATATGGAGAGAGGGTGTGGGACCTACACGTCTAAAAGTCATTATCCCAGGAAAACAAAGACAAAAGAACCCTCCCTCCTCACCACCAACGGCGAATGGGCTGAGGATGGCGTCTCCGCTTTCATCTCCGACCTCAGCATTGGCTCCTTATTCACCAAGGCACTCCTCATCCTCCTCTTCGCCTTCTTCGTCATCCGCCTGCTTATCACCATTTTCCGCCGCCGCTGCCACGACAACAATCAAGACAGCCGCAACGTTGGCAACACTGTCCCTAACTCAACCGCTCATAATCCCAACGTCCACCATGATGAAGAGAACCCGGTGCAAAATGATGAGGAGGCAACCAGTAGGGCGGTCCACATTGAAGTCGCCATCAGCTGGTACCCGAGTTTCATGTACGGTGATGAGAAAGCCAACGACCGGAACAACACGACATGTTCGATTTGCATGTGCGAGTATTTGGAGTCGGAGATGATGAGGATGATGCCGCAATGTGGGCATTACTTCCACCTTAAATGTCTCGACGAATGGCTGAGGATTAATTGGTCGTGTCCTGTGTGTCGTGACTCGCCGCCGTTGCCACATGCCACGCCTTCGTCGCCGCATGCCACGCCTCCGTCGCCTGTGGCGATGCCACCATCATCATGA 1302 0.5184 MGEPEQAQPLAAASGAGADKGARRRRMKWCGCISVSILLVIIVIIIILIFTVLKVKDPKIAMNQVKVTNLDLKVDAVPRLQVRVNMTLAVAMSIKNPNAVSFRFDNTTTTIDYHGTTVAEAYGPPGRAKARRTFPMNLTVDVMADRLMSSSGLFTDITGGEMNMTSYSIVPGRVNIWNIVKKHVEIRMNCSLTIDISGRSVKDMNCQQFKYDEEDEPGDMERGCGTYTSKSHYPRKTKTKEPSLLTTNGEWAEDGVSAFISDLSIGSLFTKALLILLFAFFVIRLLITIFRRRCHDNNQDSRNVGNTVPNSTAHNPNVHHDEENPVQNDEEATSRAVHIEVAISWYPSFMYGDEKANDRNNTTCSICMCEYLESEMMRMMPQCGHYFHLKCLDEWLRINWSCPVCRDSPPLPHATPSSPHATPPSPVAMPPSS 433
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele41g1247 433 MobiDBLite consensus disorder prediction 300 315 - -
Lele41g1247 433 MobiDBLite consensus disorder prediction 411 433 - -
Lele41g1247 433 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 319 411 IPR013083 -
Lele41g1247 433 Gene3D - 48 202 - -
Lele41g1247 433 SUPERFAMILY LEA14-like 39 150 - -
Lele41g1247 433 SMART ring_2 364 405 IPR001841 -
Lele41g1247 433 MobiDBLite consensus disorder prediction 316 333 - -
Lele41g1247 433 SUPERFAMILY RING/U-box 363 413 - -
Lele41g1247 433 Pfam Ring finger domain 363 406 IPR001841 -
Lele41g1247 433 Pfam Late embryogenesis abundant protein 93 191 IPR004864 -
Lele41g1247 433 ProSiteProfiles Zinc finger RING-type profile. 364 406 IPR001841 -
Lele41g1247 433 PANTHER RING-H2 FINGER PROTEIN ATL67 256 425 IPR044289 GO:0016567|GO:0016740
Lele41g1247 433 MobiDBLite consensus disorder prediction 300 333 - -
Lele41g1247 433 CDD RING-H2_PA-TM-RING 363 406 - -
Lele41g1247 433 SMART FANCL_C_2 360 416 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele41g1247 Lele-ChrLele41 21300868 21304945 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele41g1247 256 418 C3H Transcription Factor Family AT5G07040 31.515 2.03e-18 80.5