Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele41g1246 ATGTCCTCCTCCTCCGCCGCCGCCGCCTCCTTCCTCTCCAACATCGGCCTCGGCTACTCCATCGCCATCGCCTTCGCCTTCCTCTTCCTCCTCTCCACCCTCCTCCTCTCTTCCTACCTCTGCTGCCGCTCTAACCCTCCCCCGCCTCCTCCCCCTCCCCTCCCCCCCGACGGCATCATTCTCCCCCGCATCATCTTCGTCGCCGACGACGACGACAGCCGTGATGATAACTCCATCGCCCTTGGCCTCGCCCCTAACGTCATCAACTCCTACCCGAGGTTCTCCTACACCAAGGACGACGCTACTCTTGCTTCCGCTCCCGCCGCCGATCACAACATCACGTGCTCCATCTGTTTGTGCGAGTACAAGGACTCCGAGATGCTGAGGATGATGCCGGAGTGCCGCCATTTCTTCCACCTCGTCTGCCTCGATGCATGGCTCAAGCTCAACGGCTCCTGCCCGGTCTGTCGAAACTCCCCGCTTCCTACGCCGATCTCAACTCCGATCTCGACGCCGTTGCAGGAGGTCGTGCCTCTCTCTCAGTACGCCGCTGATCGGAGGCGGAGCAGTTGA 573 0.6213 MSSSSAAAASFLSNIGLGYSIAIAFAFLFLLSTLLLSSYLCCRSNPPPPPPPPLPPDGIILPRIIFVADDDDSRDDNSIALGLAPNVINSYPRFSYTKDDATLASAPAADHNITCSICLCEYKDSEMLRMMPECRHFFHLVCLDAWLKLNGSCPVCRNSPLPTPISTPISTPLQEVVPLSQYAADRRRSS 190
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele41g1246 190 Pfam Ring finger domain 114 157 IPR001841 -
Lele41g1246 190 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 69 161 IPR013083 -
Lele41g1246 190 SUPERFAMILY RING/U-box 114 162 - -
Lele41g1246 190 PANTHER RING-H2 FINGER PROTEIN ATL67 4 189 IPR044289 GO:0016567|GO:0016740
Lele41g1246 190 ProSiteProfiles Zinc finger RING-type profile. 115 157 IPR001841 -
Lele41g1246 190 SMART ring_2 115 156 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele41g1246 Lele-ChrLele41 21295319 21295891 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele41g1246 8 181 C3H Transcription Factor Family AT5G06490 34.409 1.54e-31 111