LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lele41g1223	ATGAAAGAAACTAAGATAATCACCAACAAGTTTGTGAAATCGGAGTTTCTGAACGAAGCTCCGAGGGTTGTCCGGATCGGTGTCTCCGATCACTACGCGACTGACACATCAAGCGGCGATGACGAATATGAGCACTTCCAGCCCAGAAGAATGAGGAGGATCGTTAACGAAATTAGAATAGGGAAATGCTCTAATTTTCCGGCAAATGGAGAGGCTTACGGAGGAGGTAAGCACACCTCTTGTTCGAAGCAGAGGTCCAGGAACAATGACTCCAGTAAGGCCCGACCCGGAAAATCCGACCAGGTCGAAGCGAAGGTAAAGAAGTACCGCGGGGTTCGACTGCGGCCCTGGGGACGGTGGTCGGCGGAGATCAGAGATCCGGCGCGTCGTCAAAGGCTGTGGCTTGGCACTTTCGACACGGCGGAGGAGGCCGCCGTGTCGTACGACCGAGCAGCTATTCGTATTAAAGGTGCGAATGCCCTGACAAACATTCTCCAACCACCACCTCCACCTAAATTCACCGAAACCGTCGAAGAATCCGAATCAACCTCAATGAACAACAACAACATCGAGTTGTTTAAAGAGCCTCCCGTATCTTCCCCAACCTCCGTCCTGAGGTTCCAGTCTCTAGAAGAACCCAAAACAGAGCCGATAGAAGCAGAAGCAGAAGCAGAGCCATATTTCCAAGACAGTAATATATGGTTCTCATCAGATTCTCCATTTTCTGATAGATATTCAGAATGGGAAGTCCCTCTCCCGATGTTCTTCGACGAGTTCACTTCAAATGACAATTTAAATTTCAGAGACAGTCCATTCCCCCTGGAACAGGATTTTGAATCATGTAAATGGGACGTAGAAAGCTACTTTCAAGAACAAGACACTACTGAAAACTGGGTTTGA	900	0.4856	MKETKIITNKFVKSEFLNEAPRVVRIGVSDHYATDTSSGDDEYEHFQPRRMRRIVNEIRIGKCSNFPANGEAYGGGKHTSCSKQRSRNNDSSKARPGKSDQVEAKVKKYRGVRLRPWGRWSAEIRDPARRQRLWLGTFDTAEEAAVSYDRAAIRIKGANALTNILQPPPPPKFTETVEESESTSMNNNNIELFKEPPVSSPTSVLRFQSLEEPKTEPIEAEAEAEPYFQDSNIWFSSDSPFSDRYSEWEVPLPMFFDEFTSNDNLNFRDSPFPLEQDFESCKWDVESYFQEQDTTENWV	299

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lele41g1223	299	PANTHER	SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR	20	235	-	-
	Lele41g1223	299	PRINTS	Ethylene responsive element binding protein signature	109	120	IPR001471	GO:0003700\|GO:0006355
	Lele41g1223	299	PRINTS	Ethylene responsive element binding protein signature	131	147	IPR001471	GO:0003700\|GO:0006355
	Lele41g1223	299	Pfam	AP2 domain	108	157	IPR001471	GO:0003700\|GO:0006355
	Lele41g1223	299	FunFam	Ethylene-responsive transcription factor 2	107	166	-	-
	Lele41g1223	299	CDD	AP2	107	163	IPR001471	GO:0003700\|GO:0006355
	Lele41g1223	299	Gene3D	AP2/ERF domain	107	165	IPR036955	GO:0003700\|GO:0006355
	Lele41g1223	299	SMART	rav1_2	108	171	IPR001471	GO:0003700\|GO:0006355
	Lele41g1223	299	MobiDBLite	consensus disorder prediction	69	104	-	-
	Lele41g1223	299	SUPERFAMILY	DNA-binding domain	108	164	IPR016177	GO:0003677
	Lele41g1223	299	MobiDBLite	consensus disorder prediction	88	104	-	-
	Lele41g1223	299	ProSiteProfiles	AP2/ERF domain profile.	108	165	IPR001471	GO:0003700\|GO:0006355

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lele41g1223	Lele-ChrLele41	21150177	21151076	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lele41g1223	3	213	AP2-EREBP Transcription Factor Family	AT4G27950	41.818	3.98e-43	149

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	AP2/ERF-ERF	Lele41g1223		AP2	4.9e-13	CL0081