Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele41g1196 ATGAAGCTCGGAGCCTCCATTCCGACGTCCCAACCAGTCCCCATTTTCTCTCGTATGTTCCCCTTCAGGCTCAAGTACCTGGCGTTGGAGTCTCGTGCTGTACGGAATGAACTACTCGGTGTACGGCGATTCTCGACTCCGTCGTTTGCTGGGAGGGCTGGCTCGAGGTCCGAGTTCAACCGGGGGAGTCGGGATACAGAAAGGGCCAGGGTTTCTAAGAGCTTGGTTGAGGATGAGGCTGAACTCAGTGACTGGGTTGACGATTTGAAGACCGATTCCTATCGAGGTCGACTCACCAGCGAAGAGGATGACTCGGATAGGGAGACGGGTCGCGATGGACGGAGGAGTAGAGCACCTGTTTCGATGAAAGGGAGCAGGGAGAATGGCTCGAGCTGGTTTGGTGAATCACCTCGGAGGAGAACTCGGGATACATTTGAGTCGTTTTCACGGAATCCTCGTACGAGCAGGAGATTTGAAGACGATGAGGATGGAAATGAATTCCGTTCTTCGAGAACTGGCAGAGTGTCTGGAGGTCGGAATTTGAAGTCTATCTTGGGGAAGAGAAGTGGTGAGGAGTTGCGAGGAGGGAGAAAATCGTATCCGATGAGTGAGGGTGATGCTGATAAAGATGAACAGAGGGCAAAGAAGTTCACGGGACGCTTTGGAGATCTTATTAGTGAAGAAGATAGTGACGCTGAAGATACTGCGGATGAAGATGTTGATGATGATTTACTGAAGAAGACTTTAGATTCTCAATCGGGTCGAGAAAAGGAGCTGAAGAAGAGCAGTCCAAGAGGTTCTCCTGAGAGATCTGACAATTATTTAAGTGAGACCAAAGCTTTGAATGAACACTTCCTTGTCTGTGTGATTGCTCTAATTTCTAAGGAGGCAACACTTCCAGTAATTCTCCGAGGTAAGGATGTCCTAGCCAAGGCTAAAACAGGCACTGGAAAAACTGTTGCCTTTTTGATTGAAAGGCAACATATGGTAATTAGTCCTGTCTTCGGCTTTGACATTCTAATACAGTATGCTGATTGGACTTTTGTTGCAAAGTCACCTCCAATTGGTCGGGATCAAAAGCGACCTCCAATCCTTGTGCTTGTCATATGCCCAACCCGGGAGCTTGCAAGTCAAGCTGCTGCAGAAGCCACTAAACTACTGAAGTACCACCCTTCCATTGGCGTTCAAGTTGTGATTGGAGGGACAAGACTTGCTTTGGAACAGAAACGCATGCAAGCTAACCCTTGCCAGATCCTTGTTGCCACTCCTGGAAGGCTTAGAGACCATATTGAGAATACAGCAGGCTTTGCAACTCGGCTGATGGGTGTGAAAGTCCTTGTGCTCGATGAAGCTGATCATCTACTAGACATGGGATTTCGCAAAGACATTGAGAAGATAATTGCTGCAGTTCCTAAACAAAGACAAACTCTTATGTTTTCTGCCACAGTTCCAGAAGAGGTCCGTCAAGTCTGCCATATTGCATTGAGAAGGGATCATGAATTTATCAATACAGTTGAGGAGGGTAGTGAGGAGACACATTCACAGGTTCAACAGATGCATTTAGTTGCTCAGTTAGACAAACATTTCTCCTTGCTCTACGTTCTTCTTAAGGAGCATATTGCAGATGATGTTGACTTTAAGGTTCTTGTTTTCTGCACAACTGCCATGGTCACAAGACTTGTTGCTGACCTTCTTGGCGAGTTGAAGTTGAATGTGAGAGAAATTCATTCAAGAAAGCCTCAGAGCTATAGAACCAGGGTCTCTGAGGAGTTTCGGAAGTCAAAGGGCCTAATCCTTGTAACTTCAGATGTATCTGCCCGTGGAGTTGATTATCCAGATGTCACTCTCGTTATACAGTTGGGTTTGCCGGCTGATAGAGAACAGTATATCCACCGACTGGGTCGAACGGGGCGGAAAGGTAAAGAAGGGCGAGGCATAGTGTTACTGGCTCCTTGGGAAGACTTCTTTTTATCTACCGTAAAGGATTTGCCTATTACAAAAGCTCCAATACCTTCAACTGATCCTGACACAAAGAAAAAGGTGGAAAGGGCACTATCCCATGTGGAGATGAAGAACAAAGAAGCAGCATATCAGTCGTGGCTTGGTTACTACAATTCCAACAAGAAGGTGGGGAAAGACAAGTATAGGTTAGTGGAGCTTGCAAATGAGTTCAGTAGAAGCATGGGGCTTGATAACCCTCCAGCTATTCCAAAGCTAGTCCTTGGCAAGATGGGACTCAGAAATATACCTGGTTTACGTTCCAAATAG 2268 0.4656 MKLGASIPTSQPVPIFSRMFPFRLKYLALESRAVRNELLGVRRFSTPSFAGRAGSRSEFNRGSRDTERARVSKSLVEDEAELSDWVDDLKTDSYRGRLTSEEDDSDRETGRDGRRSRAPVSMKGSRENGSSWFGESPRRRTRDTFESFSRNPRTSRRFEDDEDGNEFRSSRTGRVSGGRNLKSILGKRSGEELRGGRKSYPMSEGDADKDEQRAKKFTGRFGDLISEEDSDAEDTADEDVDDDLLKKTLDSQSGREKELKKSSPRGSPERSDNYLSETKALNEHFLVCVIALISKEATLPVILRGKDVLAKAKTGTGKTVAFLIERQHMVISPVFGFDILIQYADWTFVAKSPPIGRDQKRPPILVLVICPTRELASQAAAEATKLLKYHPSIGVQVVIGGTRLALEQKRMQANPCQILVATPGRLRDHIENTAGFATRLMGVKVLVLDEADHLLDMGFRKDIEKIIAAVPKQRQTLMFSATVPEEVRQVCHIALRRDHEFINTVEEGSEETHSQVQQMHLVAQLDKHFSLLYVLLKEHIADDVDFKVLVFCTTAMVTRLVADLLGELKLNVREIHSRKPQSYRTRVSEEFRKSKGLILVTSDVSARGVDYPDVTLVIQLGLPADREQYIHRLGRTGRKGKEGRGIVLLAPWEDFFLSTVKDLPITKAPIPSTDPDTKKKVERALSHVEMKNKEAAYQSWLGYYNSNKKVGKDKYRLVELANEFSRSMGLDNPPAIPKLVLGKMGLRNIPGLRSK 755
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele41g1196 755 MobiDBLite consensus disorder prediction 241 267 - -
Lele41g1196 755 MobiDBLite consensus disorder prediction 136 169 - -
Lele41g1196 755 MobiDBLite consensus disorder prediction 58 73 - -
Lele41g1196 755 MobiDBLite consensus disorder prediction 185 226 - -
Lele41g1196 755 Gene3D - 257 502 IPR027417 -
Lele41g1196 755 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 364 655 IPR027417 -
Lele41g1196 755 Pfam DEAD/DEAH box helicase 296 489 IPR011545 GO:0003676|GO:0005524
Lele41g1196 755 MobiDBLite consensus disorder prediction 96 273 - -
Lele41g1196 755 SMART ultradead3 286 519 IPR014001 -
Lele41g1196 755 PANTHER RNA HELICASE 295 685 - -
Lele41g1196 755 SMART helicmild6 559 640 IPR001650 -
Lele41g1196 755 MobiDBLite consensus disorder prediction 96 121 - -
Lele41g1196 755 MobiDBLite consensus disorder prediction 50 73 - -
Lele41g1196 755 CDD SF2_C_DEAD 516 649 - -
Lele41g1196 755 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 535 682 IPR001650 -
Lele41g1196 755 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 299 501 IPR014001 -
Lele41g1196 755 Pfam Helicase conserved C-terminal domain 536 640 IPR001650 -
Lele41g1196 755 Gene3D - 510 734 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele41g1196 Lele-ChrLele41 20946579 20951425 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele41g1196 293 670 Eukaryotic Initiation Factors Gene Family AT3G19760 26.873 2.38e-37 143