Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele41g1193 ATGGAGGACTCTATTGCCACCACTAAGGCCTACAATCTCTTCGTGAAGCTCTTGGACGGAAAAACCCTAACCCTAAAATTCCCATCTCCTGTTCTTTACGCCAATTCCATTAAGGATCGCATTTTCGAGGTTACCAGAATCCCCACACAACACCAGCGTCTTGTTACTGGCGTCCAACACCTCGACGGTAGCGAATCTGTAATATCTTGCTCGCGGGAAGGCGGAGATGTGTTCCCCACCGTCCATCTGCTGCTGCGGCTCGCCGGTGGCAAGGGAGGGTTTGGATCGCTTTTGCGTGGTGCGGCCACGAAGGCTGGGCAGAAGAAGACGAACAACTTCGAGGCTTGCAGAGATATGAGCGGCCGAAGGTTAAGGCACGTGAACGCGGAGAAGAGATTGGAGGAATGGAAGGCGGAGGAGGCGGAGAGGAAGCTGGAGAAGATTGCGGAAGAGTTTTTGAAGAAGCAGGCAAAGAAGGGTAAGAAGGGTGTGGGTGATGGCGAGGCGCACAAATATGTGGCAAAATATAGGGAGGAGTCTGAGCGATGCACTGCTGACGTTGCCGAGTCGGTGAAGGAGGCGTTGATGTCTATCAATGGCAAGAGAAAGGTTTCACACTTTGCGAAAGACGTCGCAGATGCGAAGAAGATGAAGATATGGATGGGAAAGAGGAAACTAAATGAAAGTGATAGTGATGATTCTGATGAGGATGGAAGTGATAACGAAGAAAGAAATGAGAAATCAACTGTATTAAATAATGGGAATGGCTCAGACTCAAATAAGGCTGAAGGCAGTTCAGGTTCAGTGACTGGGGGGAAACAGGATGGTGAATCTTCTGTGGCAGGCTTAAGTGGAAGTTACTCTGATGAAGAGAAAGAGACTGTTCTAGAAGAAAAAATGGACTCTAGCAATTGTCCTAACATTGAATCTCTCCAGAACATAACGGGCAAATTGGTTGAACCTGTGATATGTGATAAGATGGAAAATGGTGTTACTATGCCTGTTTTGGAATCTGCAAGTTTTGGAATTGATGCTGAAGATGGAAAGCAGGATTCTGGTGAAGCTGACAGGCTTGATTCAGCAGTTGCTCAAGCCACAAATCTCATAAGCTCACAACGTGTGGTGGATGCAAGCAAATCAAATGATATTGAAACTGATGGATTGCATGAGGATAAAGCATCATCACATGAAGAAACTCACACAAGTGCCAATGCTCAGAAAATAGAGGAGCCTTTGAATTTTGATGGATTTAATTCAGCTGCAGAACTTGAGGTTCTTGGCCTGGAAAGGTTGAAGTCCGAACTGCAGGCGCGTGGATTAAAATGTGGAGGCACATTGCAGGAGCGTACTGCCAGGCTTTTCCTTCTAAAATCGACTCCACTGGATAAACTTCCTAAAAAGTTGCTTGCCAAAAAATGA 1419 0.4644 MEDSIATTKAYNLFVKLLDGKTLTLKFPSPVLYANSIKDRIFEVTRIPTQHQRLVTGVQHLDGSESVISCSREGGDVFPTVHLLLRLAGGKGGFGSLLRGAATKAGQKKTNNFEACRDMSGRRLRHVNAEKRLEEWKAEEAERKLEKIAEEFLKKQAKKGKKGVGDGEAHKYVAKYREESERCTADVAESVKEALMSINGKRKVSHFAKDVADAKKMKIWMGKRKLNESDSDDSDEDGSDNEERNEKSTVLNNGNGSDSNKAEGSSGSVTGGKQDGESSVAGLSGSYSDEEKETVLEEKMDSSNCPNIESLQNITGKLVEPVICDKMENGVTMPVLESASFGIDAEDGKQDSGEADRLDSAVAQATNLISSQRVVDASKSNDIETDGLHEDKASSHEETHTSANAQKIEEPLNFDGFNSAAELEVLGLERLKSELQARGLKCGGTLQERTARLFLLKSTPLDKLPKKLLAKK 472
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele41g1193 472 Pfam Replication stress response SDE2 C-terminal 396 471 - -
Lele41g1193 472 MobiDBLite consensus disorder prediction 225 308 - -
Lele41g1193 472 Coils Coil 124 158 - -
Lele41g1193 472 Pfam Silencing defective 2 N-terminal ubiquitin domain 11 161 IPR024974 -
Lele41g1193 472 Coils Coil 418 438 - -
Lele41g1193 472 Gene3D - 5 111 - -
Lele41g1193 472 SUPERFAMILY Ubiquitin-like 11 91 IPR029071 -
Lele41g1193 472 MobiDBLite consensus disorder prediction 248 285 - -
Lele41g1193 472 PANTHER SPLICING FACTOR SF3A-RELATED 12 471 - -
Lele41g1193 472 MobiDBLite consensus disorder prediction 373 408 - -
Lele41g1193 472 MobiDBLite consensus disorder prediction 379 404 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele41g1193 Lele-ChrLele41 20918535 20920696 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele41g1193 412 471 C2H2 Transcription Factor Family AT5G06160 50.000 1.51e-09 58.2