Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele41g1192 ATGATAATTAAGCGGACAATGAAAATTGAAATGCCGAACCTGAAACGGTGTAAGCTAGAGGAGCAGGATGGCGAGGACTATGGGTTTACGTCGGTTCCGAAGAAACGGAAGGTTAATGGGTTTTATTCTCTTGGTATGCCTGGCGAGGCTGAAGATTTCAGCAGCGGTTCAGGGTCGTGGTGCAGTGAAGGATCGCATTGGGCTAGTGAGGTTCTATCGAATTCAAATTCTACGCCATTGAATAGTAGAACAGCAATGGAGCAAGGCTCTGAAAGGATTCGGCCTCCACTATTGCGGTCGTCTCGTGGTCGCTCTCAAACGCTGCCATCGAGGTTCAATGATTCTGTTCTCGGTACATGGAAGAATCGGGGAATCAAAGTGGAGGACGCAGACTCCAGCTTTGAAGATGATAATATTCTAGTTGAAGATAGGGTGGGGGTTAGTGGATTGGGATTTGTAAAACAGGGAAACGGAAATAACTATGGCTTCAAAAAGTCGAAGTATTATTCTTATCCTAACATGGATGGGGAGGAATTAGGATTCGACGACTCAGGTTTAAACAATTGTGACCACCGGAAGCTTACAAATTCTTTTAGCACTACGAGAACATCAATTAATGGCCATCGTTCATCAGCAGTTAAAACCGAGAGTTATACGTCGGGTTTAAGTTTTGAGGGTGTGGACCCAAAGCTTGATCGAAATGCTGCAAAAAGGAAAGATATCTATAAACTGGAGGATTTTGCTTTGGGTGACATAGTTTGGGCAAAGTGTGGAAAGAGATATCCAGCTTGGCCTGCTGTAGTGATTGATCCTATCTTGCAAGCTCCGAAGTCCGTTCTGAGCTGTTGTGTTCCTGGTGCAATTTGCGTGATGTTTTTTGGGAATGTTGTTGGGCAGGACTACGCATGGGTGAAGCAGGGAATGATATTCCCCTTCGCAGAGTTCATGGGCAGATTCCAGGGGCAGACTCGGCTGTACAAGAGCAAACCGAGTGACTTTAAGATGGCACTGGAGGAGGCATTGTTGGCAGAAGATGGTTTTCTGGATTCACATATGGGAGCTGAGCAGATAACAAATGCAGAAGCCCATCCCAATGGGTTCGTGGAGGCTACAAGTTCATATGTTGATCCAGAATATGGCTCTCAAGACCAGATTTTGGATGTACTTGGCTGATATGAGACCTTGTGCTGGCTGTGATCAACAGAAAATAGCCAAAAGCCTGTTATACCTGATCAGACCTGTGTTATCTGTAAACAAAGCCATGGATCCTGTGCAAGTTGTTGCAAGTGTGCAACTCATTTTCATGTGATGTGTGCATCTAGGGCCGGATACAGCATGGAATTGCATTCTATGGAGAAGAATGGAGTTCAGATAACGAAGAAGTTAATATATTGTGCATTCCACAGGCTTCCAACCCCAGATTCCGTAATGGTTATACATACTCCCTTGGGGGTCTTCTCTCCCAGAACTTCCCTGCAAAATCATAAGGGATGCTTCAGGGGTTCGAGGCTGGTATCATCAAAAAACGTAGAACTCTTTCAATCTTCAGCCTCTGAGACTAATGGATTTGAACCACTGTCTGCTGCAAGATGTCGTGTTTATAGGTCTTTCAAGGACTCAGATGATTCTAAAGTATTTACTTCATTCAAGGAACGTCTTCACCATTTGCAGGCAAATGATTACACTATGCTACAGTTGATTTTTGCAATCTCTAAATTTTTTTATGTCAATTTTACTTTTTGTGGCATCAGAAAACTGAAAATCATCGAGTTTGCTTTGGAAAATCGGGTTGCTGAGTACCGTGGTGAGCAGGTTAGACGAAGTGTTGCTGATATTAGGGAGGCTAAGTATCGTTCAGAAGGCAAAGACTGTTATCTGTTCAAGATCAGTGAAGAAGTGGTCATCGATGCGACACATAGGGGAAATATAGCGCGCCTGATAAACCACTCCTGCATGCCTAACTGCTATGCAAGGATTATGAGCATGGGTGCTGAGGAGAGCCGGATTGTTCTTATTGCCAAGACCCATGTTTCTGCTGGGGAAGAACTAACGTATGATTACTTGTTTGATCCGGACGAGCGGGATGAATTGAAAGTTCCTTGCCTTTGTAAAGCCCCCAATTGTAGGAAATTTATGAATTAG 2142 0.4407 MIIKRTMKIEMPNLKRCKLEEQDGEDYGFTSVPKKRKVNGFYSLGMPGEAEDFSSGSGSWCSEGSHWASEVLSNSNSTPLNSRTAMEQGSERIRPPLLRSSRGRSQTLPSRFNDSVLGTWKNRGIKVEDADSSFEDDNILVEDRVGVSGLGFVKQGNGNNYGFKKSKYYSYPNMDGEELGFDDSGLNNCDHRKLTNSFSTTRTSINGHRSSAVKTESYTSGLSFEGVDPKLDRNAAKRKDIYKLEDFALGDIVWAKCGKRYPAWPAVVIDPILQAPKSVLSCCVPGAICVMFFGNVVGQDYAWVKQGMIFPFAEFMGRFQGQTRLYKSKPSDFKMALEEALLAEDGFLDSHMGAEQITNAEAHPNGFVEATSSYVDPEYGSQDQILDVLGXYETLCWLXSTENSQKPVIPDQTCVICKQSHGSCASCCKCATHFHVMCASRAGYSMELHSMEKNGVQITKKLIYCAFHRLPTPDSVMVIHTPLGVFSPRTSLQNHKGCFRGSRLVSSKNVELFQSSASETNGFEPLSAARCRVYRSFKDSDDSKVFTSFKERLHHLQANDYTMLQLIFAISKFFYVNFTFCGIRKLKIIEFALENRVAEYRGEQVRRSVADIREAKYRSEGKDCYLFKISEEVVIDATHRGNIARLINHSCMPNCYARIMSMGAEESRIVLIAKTHVSAGEELTYDYLFDPDERDELKVPCLCKAPNCRKFMN 713
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele41g1192 713 FunFam Histone-lysine N-methyltransferase 536 713 - -
Lele41g1192 713 ProSiteProfiles PWWP domain profile. 249 315 IPR000313 -
Lele41g1192 713 Pfam PHD-zinc-finger like domain 411 468 - -
Lele41g1192 713 Gene3D SET domain 593 713 IPR046341 -
Lele41g1192 713 Gene3D - 240 345 - -
Lele41g1192 713 ProSiteProfiles Post-SET domain profile. 697 713 IPR003616 -
Lele41g1192 713 SMART PHD_3 413 469 IPR001965 -
Lele41g1192 713 ProSiteProfiles SET domain profile. 508 688 IPR001214 GO:0005515
Lele41g1192 713 MobiDBLite consensus disorder prediction 72 110 - -
Lele41g1192 713 Pfam PWWP domain 250 342 IPR000313 -
Lele41g1192 713 MobiDBLite consensus disorder prediction 72 88 - -
Lele41g1192 713 PANTHER PHD FINGER PROTEINS 13 353 - -
Lele41g1192 713 SUPERFAMILY SET domain 596 710 IPR046341 -
Lele41g1192 713 SUPERFAMILY Tudor/PWWP/MBT 245 346 - -
Lele41g1192 713 SMART PostSET_3 697 713 IPR003616 -
Lele41g1192 713 Pfam SET domain 596 687 IPR001214 GO:0005515
Lele41g1192 713 SMART set_7 572 694 IPR001214 GO:0005515
Lele41g1192 713 SMART PWWP_4 247 313 IPR000313 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele41g1192 Lele-ChrLele41 20909493 20917015 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele41g1192 597 713 C2H2 Transcription Factor Family AT2G23740 35.821 1.83e-12 69.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Lele41g1192 SET 7e-13 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele41g1192 41 20909493 20917015 Lele43g0200 43 1807068 1814554 hybridization
Lele41g1192 41 20909493 20917015 Lele44g0209 44 1367897 1375892 hybridization