Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele41g1186 ATGGAATCTAGTAGCCTGGATAGTACTGTATCATCCTTGACTATGGATGATGATGAGCATATTCCCCGTCAGTTTTCTTCGATCACGACGAAGCTGCATAACAATGGTCCTGGTACTACCAGCGTCCACGAGCTGCTTGAATGCCCTGTTTGCACCAGCTCAATGTATCCTCCAATCCATCAGGAACTTGGGGATATAAGGTGTCTGGCGCTGGAGAAAATAGCCGAATCACTTGAACTGCCTTGCAGATATGGTTCACTTGGTTGTCCAGAGATATTTCCCTATTATAGCAAACTCAAACACGAGTCTATTTGTAACTTCAGACCATACAACTGCCCCTATGCCGGGTCAGACTGTTCCGTTGTCGGGGATATTCCATACCTCGTTGCTCATTTATGGGATGACCACAGGGTTGATATGCATTCGGGATGCACATTTAACCATCGCTACGTCAAGTCTAATCCTGTGGAAGTAGAGAATGCTACATGGATGTTAACCGTCTTCCACTGTTTTGGTCAGTACTTCTGTCTCCATTTCGAAGCCTTCCAGCTTGGCACGGCTCCCGTTTACATGGCGTTCCTCCGGTTTATGGGTGACGAAAGAGAAGCTCGGAGCTACTGCTACAGTCTGGAGGTCGGAGGGAATGGGCGAAAACAGATATGGGAGGGCAGCCCAAGAAGCATAAGAGACAGCCATAAGAAAGTCAGGGACAGCCATGATGGCCTCATTGTGTACAGAAACATGGCGCTTTTCTTCTCAGGCGGCAACAGGAAAGAGTTGAAGCTACGAGTCGCCGGAAGGATCTGGAAAGAACAGCAAAATCCTGAAGGTGGGGTTTGCATACCCAATCTCTGTAGTTAA 861 0.4785 MESSSLDSTVSSLTMDDDEHIPRQFSSITTKLHNNGPGTTSVHELLECPVCTSSMYPPIHQELGDIRCLALEKIAESLELPCRYGSLGCPEIFPYYSKLKHESICNFRPYNCPYAGSDCSVVGDIPYLVAHLWDDHRVDMHSGCTFNHRYVKSNPVEVENATWMLTVFHCFGQYFCLHFEAFQLGTAPVYMAFLRFMGDEREARSYCYSLEVGGNGRKQIWEGSPRSIRDSHKKVRDSHDGLIVYRNMALFFSGGNRKELKLRVAGRIWKEQQNPEGGVCIPNLCS 286
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele41g1186 286 ProSiteProfiles Zinc finger SIAH-type profile. 77 137 IPR013010 GO:0008270
Lele41g1186 286 CDD Sina 138 266 - -
Lele41g1186 286 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 72 132 IPR013083 -
Lele41g1186 286 Pfam Seven in absentia protein family 66 264 IPR018121 GO:0005737|GO:0006511|GO:0007275
Lele41g1186 286 SUPERFAMILY TRAF domain-like 77 268 - -
Lele41g1186 286 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 147 265 IPR008974 GO:0005515
Lele41g1186 286 PANTHER E3 UBIQUITIN PROTEIN LIGASE SIAH 31 271 - -
Lele41g1186 286 FunFam E3 ubiquitin-protein ligase SINAT5-like 133 265 - -
Lele41g1186 286 FunFam E3 ubiquitin-protein ligase SINAT3 74 132 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele41g1186 Lele-ChrLele41 20853961 20856438 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele41g1186 3 272 C3H Transcription Factor Family AT2G41980 63.265 1.41e-134 381